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The map label for this gene is rpe [H]

Identifier: 148827758

GI number: 148827758

Start: 1110228

End: 1110902

Strand: Reverse

Name: rpe [H]

Synonym: CGSHiGG_06105

Alternate gene names: 148827758

Gene position: 1110902-1110228 (Counterclockwise)

Preceding gene: 148827759

Following gene: 148827757

Centisome position: 58.87

GC content: 40.89

Gene sequence:

>675_bases
ATGAAACCTTATCTTATCGCCCCATCAATTCTTTCTGCCGATCTTGCACGTCTTGGCGATGACGTACAAAACGTACTTAA
TGCAGGCGCGGATGTTATTCATTTTGATGTTATGGATAATCATTATGTACCTAATCTCACTTTTGGGCCTGCGGTATGTC
AAGCTTTACGTGATTATGGCATTACCGCACCGATAGATGTGCATTTAATGGTAAAACCGATCGATCGCATTATTCCCGAT
TTTGCTAAAGCGGGTGCGAACTACATCACTTTTCACCCAGAATCTAGCGAACATATTGACCGCTCTTTGCAGCTTATTCG
CGATTGTGGTTGTAAATCTGGATTAGTTTTTAATCCTGCGACGCCGTTGAGCTATTTAGATTATGTTTTGGATAAAGTGG
ATGTGGTTTTATTAATGTCAGTGAATCCTGGATTTGGCGGACAATCTTTTATTCCAGCAACATTGAAGAAATTACAACAG
GCTCGTAAGATCATTGATGAAAGTGGTTATGACATTCGTCTTGAAGTAGATGGTGGCGTGAAGGTTGATAACATCGCAGA
AATTGCCGCAGCGGGTGCAGATATGTTCGTGGCAGGTTCTGCAATTTTTGGTAAGCAAGATTATAAACAAGTTATTGACC
AAATGCGTACACAGTTAGCAAGTGTTAGCGCATAA

Upstream 100 bases:

>100_bases
TTTCTTTGTTTATCTTGTTATTTCATATAAGGATTACTATTGGTTTTTTGAACTTAAGTGAGTAAACTAAATGCACTCAT
TTTCTCAACGGAGAACCTTT

Downstream 100 bases:

>100_bases
CTGTTATTTTAATAAAATACGATCGTAATAGAACAGAGAAAAACAATGAATACACAATTTAAACTTATTGGCTTTGATTT
AGACGGCACCTTGGTAAATA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPIDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKQDYKQVIDQMRTQLASVSA

Sequences:

>Translated_224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPIDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKQDYKQVIDQMRTQLASVSA
>Mature_224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPIDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPATPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKQDYKQVIDQMRTQLASVSA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=41.3145539906103, Blast_Score=164, Evalue=7e-41,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=39.906103286385, Blast_Score=154, Evalue=5e-38,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=34.3195266272189, Blast_Score=99, Evalue=4e-21,
Organism=Escherichia coli, GI1789788, Length=223, Percent_Identity=78.47533632287, Blast_Score=372, Evalue=1e-105,
Organism=Escherichia coli, GI1790523, Length=210, Percent_Identity=36.1904761904762, Blast_Score=145, Evalue=1e-36,
Organism=Escherichia coli, GI1790754, Length=213, Percent_Identity=30.5164319248826, Blast_Score=106, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17552948, Length=221, Percent_Identity=38.9140271493213, Blast_Score=149, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6322341, Length=233, Percent_Identity=36.0515021459227, Blast_Score=151, Evalue=9e-38,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=42.1800947867299, Blast_Score=164, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24309; Mature: 24309

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYG
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
ITAPIDVHLMVKPIDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPA
CCCCEEEEEEECHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
TPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKQDYKQVIDQMRTQLASVSA
CHHHHHHHHHCCCCCEEECCHHHCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYG
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
ITAPIDVHLMVKPIDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPA
CCCCEEEEEEECHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
TPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKQDYKQVIDQMRTQLASVSA
CHHHHHHHHHCCCCCEEECCHHHCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]