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The map label for this gene is rraA [H]

Identifier: 148827701

GI number: 148827701

Start: 1050926

End: 1051414

Strand: Reverse

Name: rraA [H]

Synonym: CGSHiGG_05800

Alternate gene names: 148827701

Gene position: 1051414-1050926 (Counterclockwise)

Preceding gene: 148827702

Following gene: 148827692

Centisome position: 55.71

GC content: 40.9

Gene sequence:

>489_bases
ATGTTTATTGATACTTCAGAACTTTGCGATCTTTATGCAGAACAAGTGGATGTCGTGGAGCCAATTTTTTCAAGCTTTGG
TGGCGTAAGTAATTTTTACGGTAAAGTCACTACAGTAAAATGCTTTGAAAGTAATGGATTAATTGCTGAAGTATTAGAAG
AAAACGGCGAAGGTCGAGTGCTTGTCATTGATGGCGGTGGTGCGGTACGCCGTGGTTTGATTGATGCAGAATTGGCTCAA
CTTGCCGTTGATAATGGTTGGGAAGGCATTATTGTATATGGTGCAGTACGCCAAATTCAGCAATTAGAAAACCTCGATAT
TGGTATTCATGCCCTTGCGCCAATTCCAGTCAGTGCAGATGAAAGCAGTGCTGGCGAGAGTGATATTCCAGTGAATTTTG
GTGGCGTAACCTTTTTCCCAGAAGATTATATTTACGCAGATCTGACAGGAATTATACTTTCGCAAGAGCCTCTAGATTTA
GAAGATTAA

Upstream 100 bases:

>100_bases
TTCGTTATTAATCAATATCTTGTTTAGTTTAGGCTTGCTTATCGGCTAAATCGGCATATACTAAAGCAAACAAAATTTCA
ACAATCGATAGGGGAAAGTT

Downstream 100 bases:

>100_bases
TTTCTACTTGATTAACATCTTAGCATTTTATTTAAGCTTTCCTATTCTAAACGGCGTATGATACTAAAAAATTAAATTGT
AACTATATGATATATAAAAC

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MFIDTSELCDLYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQ
LAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL
ED

Sequences:

>Translated_162_residues
MFIDTSELCDLYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQ
LAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL
ED
>Mature_162_residues
MFIDTSELCDLYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQ
LAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL
ED

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=161, Percent_Identity=65.8385093167702, Blast_Score=222, Evalue=9e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR014339
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17389; Mature: 17389

Theoretical pI: Translated: 3.55; Mature: 3.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIDTSELCDLYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEECCCCEEEHHHHCCCCCEE
LVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSAD
EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCEEEECCCCCCCC
ESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDLED
CCCCCCCCCCEEECCEEECCCCCEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MFIDTSELCDLYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEECCCCEEEHHHHCCCCCEE
LVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSAD
EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCEEEECCCCCCCC
ESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDLED
CCCCCCCCCCEEECCEEECCCCCEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA