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The map label for this gene is ybaO [C]

Identifier: 148827365

GI number: 148827365

Start: 710292

End: 710753

Strand: Direct

Name: ybaO [C]

Synonym: CGSHiGG_03750

Alternate gene names: 148827365

Gene position: 710292-710753 (Clockwise)

Preceding gene: 148827363

Following gene: 148827367

Centisome position: 37.64

GC content: 37.23

Gene sequence:

>462_bases
ATGCAAACACTGGATAAATTAGATCGTAATATTTTGAATGTATTACAACAAGATGCCATGATTCCGTTAAAAGAACTGTC
AGAGAAAGTGAATAGTTCCGTTGCAACCTGCCAACGACGTGTGCAAGCATTAACTGATTCAGGCGTTATTACAAAACGAG
TTGCAGTAGTTTCTCCAAAAGCCGTTGGGCGTACGATTAGCGTATTTGTCATGGTCGAAATGGATAATCAACATTCTTAT
TATCAAGAGCAATTTGAACGGAAAATGCGTCAAGAAGACGAAGTGGTAAGCTGTTACGAAATCTCAGGGGACTATGATTT
TATGTTGCTACTCCATGCAAAAGATATGGAAAGCTATCACGCATTCACACGCCGAGTATTGACGGGTGAATTTCATGTAA
GAACTTATAAAAGTTTATTTGTAATGAATTTTACCAAAGCAGATAGTGGAATTATCTTATAG

Upstream 100 bases:

>100_bases
ATGTGATTATTATAAAATCCCAAGGCAATAAAAAATCTCAACTTTATTTTTTATTGTGATAATATTTTTCTCAATGGTTA
CATTTTTGAGAAATTATCTT

Downstream 100 bases:

>100_bases
AACAAGTGCGGTAAATTTTTACCGCACTTTGTGTATGATTAACTTAGTTTTGTCGTCTGTTTTAAGAATAAATAACCAAG
TATTGCCGAAACAGTTGATC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MQTLDKLDRNILNVLQQDAMIPLKELSEKVNSSVATCQRRVQALTDSGVITKRVAVVSPKAVGRTISVFVMVEMDNQHSY
YQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL

Sequences:

>Translated_153_residues
MQTLDKLDRNILNVLQQDAMIPLKELSEKVNSSVATCQRRVQALTDSGVITKRVAVVSPKAVGRTISVFVMVEMDNQHSY
YQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL
>Mature_153_residues
MQTLDKLDRNILNVLQQDAMIPLKELSEKVNSSVATCQRRVQALTDSGVITKRVAVVSPKAVGRTISVFVMVEMDNQHSY
YQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=140, Percent_Identity=29.2857142857143, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787116, Length=136, Percent_Identity=34.5588235294118, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17665; Mature: 17665

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLDKLDRNILNVLQQDAMIPLKELSEKVNSSVATCQRRVQALTDSGVITKRVAVVSPK
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCH
AVGRTISVFVMVEMDNQHSYYQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYH
HHCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCHHHHH
AFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL
HHHHHHHCCHHHHHHHHHHHEEEECCCCCCCCC
>Mature Secondary Structure
MQTLDKLDRNILNVLQQDAMIPLKELSEKVNSSVATCQRRVQALTDSGVITKRVAVVSPK
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCH
AVGRTISVFVMVEMDNQHSYYQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYH
HHCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCHHHHH
AFTRRVLTGEFHVRTYKSLFVMNFTKADSGIIL
HHHHHHHCCHHHHHHHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]