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The map label for this gene is yifB [C]

Identifier: 148824086

GI number: 148824086

Start: 3217960

End: 3219471

Strand: Reverse

Name: yifB [C]

Synonym: TBFG_12911

Alternate gene names: 148824086

Gene position: 3219471-3217960 (Counterclockwise)

Preceding gene: 148824087

Following gene: 148824085

Centisome position: 72.77

GC content: 68.98

Gene sequence:

>1512_bases
ATGGCGCTGGGGCGTGCGTTCTCGGTCGCGGTGCGGGGGCTGGACGGCGAGATCGTGGAAATCGAAGCCGACATCACCTC
AGGGTTGCCGGGTGTGCATCTGGTGGGTCTGCCCGATGCTGCATTGCAGGAGTCCCGCGACCGGGTCCGCGCGGCGGTCA
CCAATTGCGGAAACAGCTGGCCGATGGCCAGGCTCACGCTCGCGCTGTCGCCGGCGACGCTGCCGAAAATGGGCTCGGTC
TACGACATCGCCCTGGCCGCGGCGGTGTTGTCGGCGCAACAAAAGAAGCCGTGGGAACGTCTGGAGAACACGCTGCTGCT
GGGTGAATTGTCGCTGGACGGACGGGTGCGTCCGGTGCGTGGGGTGTTGCCCGCCGTGCTGGCAGCCAAACGTGACGGTT
GGCCGGCCGTCGTCGTTCCGGCCGACAACCTGCCCGAGGCCAGCCTGGTGGACGGAATCGACGTCCGGGGTGTTCGCACG
CTGGGGCAGTTGCAGAGCTGGCTACGCGGGTCCACCGGCTTGGCCGGGCGGATCACCACGGCCGACACCACCCCCGAGTC
TGCGGCGGACCTCGCCGATGTGGTGGGCCAGTCCCAAGCACGGTTCGCCGTCGAGGTGGCCGCCGCCGGGGCGCATCACC
TCATGCTGACTGGTCCACCGGGTGTCGGCAAAACAATGCTGGCGCAACGTCTTCCGGGGCTGTTGCCGTCGCTGTCGGGC
AGCGAGTCGTTGGAGGTGACCGCGATCCACTCGGTGGCTGGCCTGCTGTCGGGGGACACACCGTTGATTACCCGGCCGCC
GTTCGTGGCGCCGCACCACAGTTCCAGCGTTGCGGCGCTTGTCGGCGGGGGATCGGGGATGGCTCGCCCAGGGGCGGTCA
GCAGGGCGCATCGCGGGGTGTTGTTCCTGGACGAGTGCGCCGAGATCAGCCTTAGCGCGCTGGAAGCATTGCGAACACCG
TTGGAGGACGGTGAAATCCGCCTAGCGCGCCGTGACGGGGTGGCGTGCTACCCGGCACGGTTTCAGCTCGTGCTAGCCGC
CAACCCGTGCCCGTGCGCGCCCGCCGATCCACAGGATTGCATCTGTGCGGCGGCTACCAAACGACGGTATCTGGGCAAAC
TGTCTGGGCCGTTGCTGGATCGGGTGGACCTACGGGTGCAGATGCATCGGCTTCGGGCCGGGGCGTTCTCGGCCGCGGAC
GGCGAGTCGACGTCGCAGGTTCGCCAGCGGGTGGCGCTGGCCCGGGAGGCGGCCGCGCAACGATGGCGGCCACATGGGTT
CCGGACCAACGCCGAAGTCAGCGGGCCGCTGTTGCGCCGCAAGTTTCGGCCCAGCAGCGCCGCGATGCTCCCGTTGCGCA
CCGCGCTGGACCGCGGGCTACTCAGCATCCGCGGTGTGGATCGCACCTTGCGGGTGGCCTGGAGTTTGGCCGACTTGGCC
GGTCGCACATCGCCAGGCATCGACGAGGTCGCCGCCGCCCTGAGCTTCCGGCAAACCGGAGCACGACGATGA

Upstream 100 bases:

>100_bases
AGCGCTGGGCTGCGGTGCGCATCGATGTGATCGGCGTGCGAGTCGGCCCCAAGAATTCAGGCCGCACCCCAGAGCTCACC
CACCTGCAGGGGATCGGCTG

Downstream 100 bases:

>100_bases
TCGATCCGACGGCGCGGGCGTGGGCCTATCTGTCCCGGGTGGCCGAACCGCCGTGCGCCCAGCTGGCCGCGCTGGTGCGA
TGTGTGGGCCCCGTGGAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MALGRAFSVAVRGLDGEIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVTNCGNSWPMARLTLALSPATLPKMGSV
YDIALAAAVLSAQQKKPWERLENTLLLGELSLDGRVRPVRGVLPAVLAAKRDGWPAVVVPADNLPEASLVDGIDVRGVRT
LGQLQSWLRGSTGLAGRITTADTTPESAADLADVVGQSQARFAVEVAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPSLSG
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFLDECAEISLSALEALRTP
LEDGEIRLARRDGVACYPARFQLVLAANPCPCAPADPQDCICAAATKRRYLGKLSGPLLDRVDLRVQMHRLRAGAFSAAD
GESTSQVRQRVALAREAAAQRWRPHGFRTNAEVSGPLLRRKFRPSSAAMLPLRTALDRGLLSIRGVDRTLRVAWSLADLA
GRTSPGIDEVAAALSFRQTGARR

Sequences:

>Translated_503_residues
MALGRAFSVAVRGLDGEIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVTNCGNSWPMARLTLALSPATLPKMGSV
YDIALAAAVLSAQQKKPWERLENTLLLGELSLDGRVRPVRGVLPAVLAAKRDGWPAVVVPADNLPEASLVDGIDVRGVRT
LGQLQSWLRGSTGLAGRITTADTTPESAADLADVVGQSQARFAVEVAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPSLSG
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFLDECAEISLSALEALRTP
LEDGEIRLARRDGVACYPARFQLVLAANPCPCAPADPQDCICAAATKRRYLGKLSGPLLDRVDLRVQMHRLRAGAFSAAD
GESTSQVRQRVALAREAAAQRWRPHGFRTNAEVSGPLLRRKFRPSSAAMLPLRTALDRGLLSIRGVDRTLRVAWSLADLA
GRTSPGIDEVAAALSFRQTGARR
>Mature_502_residues
ALGRAFSVAVRGLDGEIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVTNCGNSWPMARLTLALSPATLPKMGSVY
DIALAAAVLSAQQKKPWERLENTLLLGELSLDGRVRPVRGVLPAVLAAKRDGWPAVVVPADNLPEASLVDGIDVRGVRTL
GQLQSWLRGSTGLAGRITTADTTPESAADLADVVGQSQARFAVEVAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPSLSGS
ESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFLDECAEISLSALEALRTPL
EDGEIRLARRDGVACYPARFQLVLAANPCPCAPADPQDCICAAATKRRYLGKLSGPLLDRVDLRVQMHRLRAGAFSAADG
ESTSQVRQRVALAREAAAQRWRPHGFRTNAEVSGPLLRRKFRPSSAAMLPLRTALDRGLLSIRGVDRTLRVAWSLADLAG
RTSPGIDEVAAALSFRQTGARR

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily

Homologues:

Organism=Escherichia coli, GI145693202, Length=499, Percent_Identity=38.6773547094188, Blast_Score=310, Evalue=1e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2897_MYCTU (P68909)

Other databases:

- EMBL:   BX842581
- EMBL:   AE000516
- PIR:   D70926
- RefSeq:   NP_217413.1
- RefSeq:   NP_337477.1
- ProteinModelPortal:   P68909
- SMR:   P68909
- EnsemblBacteria:   EBMYCT00000002301
- EnsemblBacteria:   EBMYCT00000070648
- GeneID:   888212
- GeneID:   925313
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT2965
- KEGG:   mtu:Rv2897c
- TIGR:   MT2965
- TubercuList:   Rv2897c
- GeneTree:   EBGT00050000016951
- HOGENOM:   HBG665393
- OMA:   NAGFEFP
- ProtClustDB:   CLSK792149
- GO:   GO:0040007
- GO:   GO:0015979
- GO:   GO:0006508
- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568
- SMART:   SM00382
- TIGRFAMs:   TIGR00368

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: NA

Molecular weight: Translated: 52913; Mature: 52782

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGRAFSVAVRGLDGEIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVTNCGNSW
CCCCCEEEEEEECCCCCEEEEEEHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PMARLTLALSPATLPKMGSVYDIALAAAVLSAQQKKPWERLENTLLLGELSLDGRVRPVR
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCEEEEEEECCCCCCCHHH
GVLPAVLAAKRDGWPAVVVPADNLPEASLVDGIDVRGVRTLGQLQSWLRGSTGLAGRITT
HHHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
ADTTPESAADLADVVGQSQARFAVEVAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPSLSG
CCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCC
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGV
CCCEEEEEHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCE
LFLDECAEISLSALEALRTPLEDGEIRLARRDGVACYPARFQLVLAANPCPCAPADPQDC
EEEHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCEEEEEEECCCCCCCCCCHHHH
ICAAATKRRYLGKLSGPLLDRVDLRVQMHRLRAGAFSAADGESTSQVRQRVALAREAAAQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
RWRPHGFRTNAEVSGPLLRRKFRPSSAAMLPLRTALDRGLLSIRGVDRTLRVAWSLADLA
HCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHC
GRTSPGIDEVAAALSFRQTGARR
CCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALGRAFSVAVRGLDGEIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVTNCGNSW
CCCCEEEEEEECCCCCEEEEEEHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PMARLTLALSPATLPKMGSVYDIALAAAVLSAQQKKPWERLENTLLLGELSLDGRVRPVR
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCEEEEEEECCCCCCCHHH
GVLPAVLAAKRDGWPAVVVPADNLPEASLVDGIDVRGVRTLGQLQSWLRGSTGLAGRITT
HHHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
ADTTPESAADLADVVGQSQARFAVEVAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPSLSG
CCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCC
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGV
CCCEEEEEHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCE
LFLDECAEISLSALEALRTPLEDGEIRLARRDGVACYPARFQLVLAANPCPCAPADPQDC
EEEHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCEEEEEEECCCCCCCCCCHHHH
ICAAATKRRYLGKLSGPLLDRVDLRVQMHRLRAGAFSAADGESTSQVRQRVALAREAAAQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
RWRPHGFRTNAEVSGPLLRRKFRPSSAAMLPLRTALDRGLLSIRGVDRTLRVAWSLADLA
HCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHC
GRTSPGIDEVAAALSFRQTGARR
CCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036