| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
Click here to switch to the map view.
The map label for this gene is trxA [H]
Identifier: 148654106
GI number: 148654106
Start: 2876261
End: 2876587
Strand: Direct
Name: trxA [H]
Synonym: PsycPRwf_2309
Alternate gene names: 148654106
Gene position: 2876261-2876587 (Clockwise)
Preceding gene: 148654102
Following gene: 148654107
Centisome position: 96.55
GC content: 41.9
Gene sequence:
>327_bases ATGTCAGATTTAATCGTTAATTCAACCGACTCAAACTTCGAACAAGATGTTGCTCAGTCTGATGTGCCTGTACTGGTAGA TTTTTGGGCAGCGTGGTGTGGTCCTTGTAAAGCCATCGCGCCTGTACTAGAAGAGCTTGCTGATGACTACAATGGTAAAG TTAAAATTGTTAAGATTGATGTCGATGAAAACCCAGAAACTGCCAGCCGCTTTGGCATCCGTAGCATCCCAACTTTAATG GTATTTAAAGGTGGTGAAAAAGTAGATACAGTTATGGGTCTACAGCCAAAGTCAGATCTAGCCGCTTTACTAGACAAGCA TCTATAA
Upstream 100 bases:
>100_bases CTTCAGTGAAAACCGGCAATAAACGCAGTAAATAATATAGCTGGCCGCTGATGTCTGTACTGTTTTATTCAGATTTTAAC ATCCATAAAAGGAAAAAATT
Downstream 100 bases:
>100_bases GCGCTTATACGCGGCCATTAACCGCTATAAAGTAAGTAGGCTTGCCTGATATAGGCAGCGATAAAAAAGCGACTGTTATT GTTATGGTCGCTTTTTTTTG
Product: thioredoxin
Products: NA
Alternate protein names: Trx-1; Thioredoxin-M [H]
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MSDLIVNSTDSNFEQDVAQSDVPVLVDFWAAWCGPCKAIAPVLEELADDYNGKVKIVKIDVDENPETASRFGIRSIPTLM VFKGGEKVDTVMGLQPKSDLAALLDKHL
Sequences:
>Translated_108_residues MSDLIVNSTDSNFEQDVAQSDVPVLVDFWAAWCGPCKAIAPVLEELADDYNGKVKIVKIDVDENPETASRFGIRSIPTLM VFKGGEKVDTVMGLQPKSDLAALLDKHL >Mature_107_residues SDLIVNSTDSNFEQDVAQSDVPVLVDFWAAWCGPCKAIAPVLEELADDYNGKVKIVKIDVDENPETASRFGIRSIPTLMV FKGGEKVDTVMGLQPKSDLAALLDKHL
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=95, Percent_Identity=37.8947368421053, Blast_Score=84, Evalue=3e-17, Organism=Homo sapiens, GI224493972, Length=97, Percent_Identity=43.298969072165, Blast_Score=73, Evalue=5e-14, Organism=Homo sapiens, GI42794771, Length=95, Percent_Identity=44.2105263157895, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI5031973, Length=102, Percent_Identity=34.3137254901961, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI21361657, Length=105, Percent_Identity=32.3809523809524, Blast_Score=69, Evalue=6e-13, Organism=Homo sapiens, GI50592994, Length=76, Percent_Identity=40.7894736842105, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI4758304, Length=89, Percent_Identity=39.3258426966292, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI87082331, Length=108, Percent_Identity=51.8518518518518, Blast_Score=127, Evalue=1e-31, Organism=Escherichia coli, GI1788936, Length=104, Percent_Identity=43.2692307692308, Blast_Score=106, Evalue=3e-25, Organism=Escherichia coli, GI87081747, Length=105, Percent_Identity=42.8571428571429, Blast_Score=91, Evalue=1e-20, Organism=Caenorhabditis elegans, GI212646193, Length=83, Percent_Identity=46.9879518072289, Blast_Score=88, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71998175, Length=105, Percent_Identity=40, Blast_Score=83, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17510299, Length=84, Percent_Identity=44.047619047619, Blast_Score=76, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71980562, Length=89, Percent_Identity=38.2022471910112, Blast_Score=75, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71980565, Length=84, Percent_Identity=39.2857142857143, Blast_Score=75, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17554386, Length=88, Percent_Identity=38.6363636363636, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17556044, Length=81, Percent_Identity=38.2716049382716, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17509965, Length=71, Percent_Identity=42.2535211267606, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17507705, Length=70, Percent_Identity=34.2857142857143, Blast_Score=65, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17549970, Length=101, Percent_Identity=35.6435643564356, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115532380, Length=79, Percent_Identity=36.7088607594937, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115532378, Length=79, Percent_Identity=36.7088607594937, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17544108, Length=79, Percent_Identity=36.7088607594937, Blast_Score=62, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321648, Length=88, Percent_Identity=42.0454545454545, Blast_Score=82, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323072, Length=90, Percent_Identity=42.2222222222222, Blast_Score=78, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6319925, Length=88, Percent_Identity=35.2272727272727, Blast_Score=67, Evalue=7e-13, Organism=Drosophila melanogaster, GI28573567, Length=98, Percent_Identity=42.8571428571429, Blast_Score=93, Evalue=4e-20, Organism=Drosophila melanogaster, GI24639826, Length=102, Percent_Identity=39.2156862745098, Blast_Score=85, Evalue=1e-17, Organism=Drosophila melanogaster, GI24664269, Length=82, Percent_Identity=43.9024390243902, Blast_Score=79, Evalue=7e-16, Organism=Drosophila melanogaster, GI24658597, Length=94, Percent_Identity=39.3617021276596, Blast_Score=75, Evalue=6e-15, Organism=Drosophila melanogaster, GI24639068, Length=105, Percent_Identity=32.3809523809524, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI17648013, Length=74, Percent_Identity=43.2432432432432, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI24583090, Length=74, Percent_Identity=43.2432432432432, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI17530795, Length=76, Percent_Identity=35.5263157894737, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI19921434, Length=89, Percent_Identity=34.8314606741573, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI21358065, Length=91, Percent_Identity=36.2637362637363, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI17647799, Length=94, Percent_Identity=36.1702127659575, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11793; Mature: 11661
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLIVNSTDSNFEQDVAQSDVPVLVDFWAAWCGPCKAIAPVLEELADDYNGKVKIVKID CCCCEECCCCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEE VDENPETASRFGIRSIPTLMVFKGGEKVDTVMGLQPKSDLAALLDKHL CCCCCCHHHHCCCCCCCEEEEEECCCCCHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure SDLIVNSTDSNFEQDVAQSDVPVLVDFWAAWCGPCKAIAPVLEELADDYNGKVKIVKID CCCEECCCCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEE VDENPETASRFGIRSIPTLMVFKGGEKVDTVMGLQPKSDLAALLDKHL CCCCCCHHHHCCCCCCCEEEEEECCCCCHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3096973; 3926769 [H]