| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is rho [H]
Identifier: 148654107
GI number: 148654107
Start: 2877323
End: 2878621
Strand: Direct
Name: rho [H]
Synonym: PsycPRwf_2310
Alternate gene names: 148654107
Gene position: 2877323-2878621 (Clockwise)
Preceding gene: 148654106
Following gene: 148654108
Centisome position: 96.59
GC content: 45.88
Gene sequence:
>1299_bases ATGACTCAACAACCATCGAACGAAACCTCTATGAACCTGACTGAACTAAAAAAGAACTCCGTTGCTGAATTGCTAAATAT AGCAAAAGAAATGGGGCTCGATAATTTGGCACGTAGCCGCAAACAAGACATCATCTTTGCTATTTTAAAAAAGCACGCCA AAAATGGTGAAGCCATTTACGGCGACGGGGTACTTGAAGTGCTTCCTGATGGATTTGGCTTCCTAAGATCTTCAGAAGGC TCTTATTTGGCTGGACCTGATGACATCTATGTAAGCCCAAGCCAAATCCGCCGCTTTAGCCTAAAAACAGGCGACTCTAT TGCCGGCACCATCCGTCCACCAAAAGATTCAGAACGTTACTTTGCCTTACTTAAAGTGGGTGAAATCAACTTCGATACCC CAGATCGCTCACGTCACAAATTAATCTTCGAGAACTTAACCCCACTATTCCCCACCGAGCAATTAAAGCTTGAGATGGGC AATGGTACAACCGAAGACTTAACCGGACGTGTCATTGACTTAATCGCCCCTATTGGTAAAGGCCAGCGCTCCATTATCGT GGCGCCGCCCAAAGCCGGTAAAACCGTTCTACTACAAACCATCGCTCAATCTATTACCCGCAATAACCCTGAATGCTATC TGATTGTACTACTTATCGATGAGCGCCCAGAGGAAGTGACCGAAATGCAGCGTACTGTGCGCGGTGAAGTGGTTGCATCA ACCTTTGATGAACCGCCACAGCGTCACGTTCAAGTGGCTGAAATGGTCATCGAAAAAGCCAAGCGCTTGGTAGAACATAA GCAAGATGTGGTGATTTTATTAGATTCAATTACCCGATTGGCTCGTGCCTATAACACTGTGGTGCCCTCATCAGGTAAAG TGTTGACTGGTGGTGTGGATGCCAATGCTCTAGCCCAGCCCAAGCGCTTCTTTGGTGCGGCACGTAATATCGAGGAAGGG GGCAGCTTAACCATCATTTCAACTGCGCTGATTGATACGGGCAGTAAAATGGACAGCGTTATCTTTGAAGAATTCAAAGG TACTGGTAACCAAGAGATTACCCTTGAGCGTGACTTAGCCGAAAAACGAGTATTCCCAGCCATTAATATCAAAAAATCAG GCACCCGCCGTGAGGAGCGCTTGCTTGACGAAGATACGCTGCGTAAAGTTTGGATTTTGCGTAAACTGCTACAGCCTATG GATGGCGTACAAGCCACTGAGTTCTTATTAGATCGCTTAAAAGAAGCCAAGACCAATGACGACTTTTTCGATCAAATGAA GCGCAAATCACAAAACTAA
Upstream 100 bases:
>100_bases TTTTTACCAACTCTATCTACGTGTAGCGCAGGCCTTTTGTCGCCTACACCATTATCATTTATTGCATATGCTTAGTTTTT AGGCGTACCGGCAGCTGACT
Downstream 100 bases:
>100_bases TAAGCTCAAGATAAGCTATATAAATAAAGGCCACTGATTCAGTGGCCTTTATTTATATAGCCAACCAAAAAAGCTTGATA GGTTGGCAAAATCGATACAC
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MTQQPSNETSMNLTELKKNSVAELLNIAKEMGLDNLARSRKQDIIFAILKKHAKNGEAIYGDGVLEVLPDGFGFLRSSEG SYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLEMG NGTTEDLTGRVIDLIAPIGKGQRSIIVAPPKAGKTVLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVAS TFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALAQPKRFFGAARNIEEG GSLTIISTALIDTGSKMDSVIFEEFKGTGNQEITLERDLAEKRVFPAINIKKSGTRREERLLDEDTLRKVWILRKLLQPM DGVQATEFLLDRLKEAKTNDDFFDQMKRKSQN
Sequences:
>Translated_432_residues MTQQPSNETSMNLTELKKNSVAELLNIAKEMGLDNLARSRKQDIIFAILKKHAKNGEAIYGDGVLEVLPDGFGFLRSSEG SYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLEMG NGTTEDLTGRVIDLIAPIGKGQRSIIVAPPKAGKTVLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVAS TFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALAQPKRFFGAARNIEEG GSLTIISTALIDTGSKMDSVIFEEFKGTGNQEITLERDLAEKRVFPAINIKKSGTRREERLLDEDTLRKVWILRKLLQPM DGVQATEFLLDRLKEAKTNDDFFDQMKRKSQN >Mature_431_residues TQQPSNETSMNLTELKKNSVAELLNIAKEMGLDNLARSRKQDIIFAILKKHAKNGEAIYGDGVLEVLPDGFGFLRSSEGS YLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLEMGN GTTEDLTGRVIDLIAPIGKGQRSIIVAPPKAGKTVLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVAST FDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALAQPKRFFGAARNIEEGG SLTIISTALIDTGSKMDSVIFEEFKGTGNQEITLERDLAEKRVFPAINIKKSGTRREERLLDEDTLRKVWILRKLLQPMD GVQATEFLLDRLKEAKTNDDFFDQMKRKSQN
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=418, Percent_Identity=73.9234449760766, Blast_Score=655, Evalue=0.0, Organism=Escherichia coli, GI1788251, Length=265, Percent_Identity=28.6792452830189, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 48250; Mature: 48119
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQPSNETSMNLTELKKNSVAELLNIAKEMGLDNLARSRKQDIIFAILKKHAKNGEAIY CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE GDGVLEVLPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERY CCCHHHHCCCCHHHHCCCCCCEECCCCCEEECHHHHHEECCCCCCCCEECCCCCCCCCCE FALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLEMGNGTTEDLTGRVIDLIAPIGK EEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHCCCC GQRSIIVAPPKAGKTVLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVAS CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH TFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGKVLTGGVD HCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCEEECCCC ANALAQPKRFFGAARNIEEGGSLTIISTALIDTGSKMDSVIFEEFKGTGNQEITLERDLA CCHHHCCHHHHHHHCCCCCCCCEEEEEEEHHCCCCHHHHHHHHHHCCCCCCEEEEEHHHH EKRVFPAINIKKSGTRREERLLDEDTLRKVWILRKLLQPMDGVQATEFLLDRLKEAKTND HHHCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC DFFDQMKRKSQN HHHHHHHHHCCC >Mature Secondary Structure TQQPSNETSMNLTELKKNSVAELLNIAKEMGLDNLARSRKQDIIFAILKKHAKNGEAIY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE GDGVLEVLPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERY CCCHHHHCCCCHHHHCCCCCCEECCCCCEEECHHHHHEECCCCCCCCEECCCCCCCCCCE FALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLEMGNGTTEDLTGRVIDLIAPIGK EEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHCCCC GQRSIIVAPPKAGKTVLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVAS CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH TFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGKVLTGGVD HCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCEEECCCC ANALAQPKRFFGAARNIEEGGSLTIISTALIDTGSKMDSVIFEEFKGTGNQEITLERDLA CCHHHCCHHHHHHHCCCCCCCCEEEEEEEHHCCCCHHHHHHHHHHCCCCCCEEEEEHHHH EKRVFPAINIKKSGTRREERLLDEDTLRKVWILRKLLQPMDGVQATEFLLDRLKEAKTND HHHCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC DFFDQMKRKSQN HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]