| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148654089
Identifier: 148654089
GI number: 148654089
Start: 2858343
End: 2860574
Strand: Direct
Name: 148654089
Synonym: PsycPRwf_2292
Alternate gene names: NA
Gene position: 2858343-2860574 (Clockwise)
Preceding gene: 148654087
Following gene: 148654093
Centisome position: 95.95
GC content: 50.04
Gene sequence:
>2232_bases ATGCTATTAACCTCTTTATGCGCCACCTCCGCTTTGTCTTTATCTTTACAGACAATCAACTGCCGTAACGACTCTAACCC CATCTCTTTAGCGAGCTCTGCATCGGCCTTCTATGTTAAAGATAATGGCTCATTAGAGAACTCTCAACTAAGCACAAGTG ACCGAGTAGCACCTATTGCGGCAAGTACTCACACTGGCGCTAGTCATCCTCAGCTTAAACCCAATAAAGCGCCATATTTA CTCGGTGCAGCTCAAGCTGATATCACAGGCGCTGCGGCAGAGACAGGTATGTTCGGTTATGCCGCGCAGCAAGTGGCTCA AGGCATCAATGATAGATTGTACGCTCATGCCTTTATTATTGTAGACAATCAGGCAGACAGCGCACAAACTACTCAAAACA GCGCCCGTATTGTCTATGTATCAGCCGATATGGGTGCCATGTTTAATGCGGTCAGACTCGAAGTGTTAAAACGCTTGCAC GCCTTGTATGGCCCACTATACACAGATGCCAACGTCATGCTCACGGCTACCCATACCCATGTGGGCAATGCCGGCTACTC CCATCAAAGATTGTATCAAATTGCCAGTAAAGATGACACCACTGCCGGCTATAGCGAACAGAACTTCACTGCCATAGTGG ATGGCATCGTACGCGCTATTAGTAAGGCGCATCAAAACTTAACACCCGGCACCTTATCACTAGCGCAAGGCAAGCTCACA GGCGCGACACGCAACCGCTCAGCCGCCGCTTATAACAATAATCCCGATGCCAAAGCCTATGACAGTAATGTCAATGACAC CATGACTCAGCTGCGCCTTGATGATCAAAATGGCAAGCCTTTGGGCGCCATTAACTGGTTTGCCATTCACCCAACCAGCT TTAGCAATCAGTTTATGTACCTAAGTGCTGATAATAAAGGCTATGCTCAGCAAGGCATGCAAGCGGCCATTACCAAAAAA ACAGGCCAGCCCTTTGTGGCCGCCTTTGCCAACGCTGATGAGGGAGATGTGGTGGCCGCAGGAGGTAATGCCCACTCCTC GGCAGGCTTCGAGGGAGAAGATGAGGAATGGCATAACGTGGTTCGTGATGGCTCCTTGCAGCTTAATAAAGCACTTGAGC TATGGGACAAAGCCGAGCCGGTAGTTGGACCCATTGACACACGAGCCCGCTGGATTGATTTAAATGGCTATGTGGTGGAT GCTCAATACACCCACGGTGCTGGCGAGCAAAGATTATGTGTGCCAGCTCGCGGCTATGCGTTTGCCGCCGGTGCAGAAAA TGGCCCCTCCGACATACCCGGTATCTATGAAGGTATGACCAAAGACTCTTTGAGTATCACTGACAAGATTAACAAGACCG ATACTTCGATATTGGGCAGCGCTACTCGAGCCGCTTTTGGTGTGGTGGGCGCTGTCAGTCAAGATCCGTGTCAGGCCGAA AAGCCGGTGCTCCTACCTACCGGTAAATTGGGCTGGGTCAATAGCAAACAGCCGGTACAATTAATGCGCATTGCCAACCT AGCCTTAGTGGCCATACCCGGAGAGCCAACCACCATGGTGGGGCGGCGTTTGCAATCTGCGGTGCTGGATGAATTAAAAG ACAGCGGCGTCAATACTGTCATCGTCAATGGACTGGCCAATAACTATAGCGGCTATGTTGCGACCCGTGAGGAATATGCA CTGCAACATTATGAGGGCGCCTCTACCGAATATGGCCCATATCAAAGTAATGCCTATGTGCAAGAGTATGTACAACTGGC TCGGGCACTCAAACACAATCAGCCGCTAAAGAACCATACCGCGCCACCTTCTATAGCAGCTGGCAAATTCGCTGAGCGAC CCGGCGTCGTATTTGATGACAAACCCTTTAACCAAGCTTGGGGACAGGTACTTATGCAGCCCAAGCAGCATTATCAGAAG GCCGAGGTGGTTAGTGTGAGCTTCCGCGGTGCCCATCCAAAAAATAACTTACGCACCGAGGACACCTTTTTAAAAGTGCA GCGCCTAGTGCAAGGTAAATGGGTAGACTACCTGACGGATGCAAGCTTTGATACTCGGTACAGTTGGGCGCGCGAGGGCA TCACGTATAGCAAAGTTACCATTGATTGGCGCATTGATGAAGACACGCCTTCTGGTACTTACCGTATATTGCATCAAGGA GATTGGAAAAACGGATGGGACGGTAAAATCACCGCGTATGCGGGTGCGTCTTATGCTTTTGAAGTGAAATAA
Upstream 100 bases:
>100_bases TACTGAGCTTAGCATAGTATTTGCAGCCACTGCACGCAAGCGCTAACTTAGCGGCCGCTATGTGGTTGTCTTTTATTCAC TTTTCAATTGGCGAGGCTTT
Downstream 100 bases:
>100_bases CCTGCATAAAAAAAGCCAGATACACGGGGTATATGGCTTCTTTAATGGGGAGAAAAGTATGAAACAAGTGTGTTGATTGC AACGCTTAATTTAACCGCAG
Product: neutral/alkaline nonlysosomal ceramidase
Products: NA
Alternate protein names: N-CDase; NCDase; Acylsphingosine deacylase; N-acylsphingosine amidohydrolase [H]
Number of amino acids: Translated: 743; Mature: 743
Protein sequence:
>743_residues MLLTSLCATSALSLSLQTINCRNDSNPISLASSASAFYVKDNGSLENSQLSTSDRVAPIAASTHTGASHPQLKPNKAPYL LGAAQADITGAAAETGMFGYAAQQVAQGINDRLYAHAFIIVDNQADSAQTTQNSARIVYVSADMGAMFNAVRLEVLKRLH ALYGPLYTDANVMLTATHTHVGNAGYSHQRLYQIASKDDTTAGYSEQNFTAIVDGIVRAISKAHQNLTPGTLSLAQGKLT GATRNRSAAAYNNNPDAKAYDSNVNDTMTQLRLDDQNGKPLGAINWFAIHPTSFSNQFMYLSADNKGYAQQGMQAAITKK TGQPFVAAFANADEGDVVAAGGNAHSSAGFEGEDEEWHNVVRDGSLQLNKALELWDKAEPVVGPIDTRARWIDLNGYVVD AQYTHGAGEQRLCVPARGYAFAAGAENGPSDIPGIYEGMTKDSLSITDKINKTDTSILGSATRAAFGVVGAVSQDPCQAE KPVLLPTGKLGWVNSKQPVQLMRIANLALVAIPGEPTTMVGRRLQSAVLDELKDSGVNTVIVNGLANNYSGYVATREEYA LQHYEGASTEYGPYQSNAYVQEYVQLARALKHNQPLKNHTAPPSIAAGKFAERPGVVFDDKPFNQAWGQVLMQPKQHYQK AEVVSVSFRGAHPKNNLRTEDTFLKVQRLVQGKWVDYLTDASFDTRYSWAREGITYSKVTIDWRIDEDTPSGTYRILHQG DWKNGWDGKITAYAGASYAFEVK
Sequences:
>Translated_743_residues MLLTSLCATSALSLSLQTINCRNDSNPISLASSASAFYVKDNGSLENSQLSTSDRVAPIAASTHTGASHPQLKPNKAPYL LGAAQADITGAAAETGMFGYAAQQVAQGINDRLYAHAFIIVDNQADSAQTTQNSARIVYVSADMGAMFNAVRLEVLKRLH ALYGPLYTDANVMLTATHTHVGNAGYSHQRLYQIASKDDTTAGYSEQNFTAIVDGIVRAISKAHQNLTPGTLSLAQGKLT GATRNRSAAAYNNNPDAKAYDSNVNDTMTQLRLDDQNGKPLGAINWFAIHPTSFSNQFMYLSADNKGYAQQGMQAAITKK TGQPFVAAFANADEGDVVAAGGNAHSSAGFEGEDEEWHNVVRDGSLQLNKALELWDKAEPVVGPIDTRARWIDLNGYVVD AQYTHGAGEQRLCVPARGYAFAAGAENGPSDIPGIYEGMTKDSLSITDKINKTDTSILGSATRAAFGVVGAVSQDPCQAE KPVLLPTGKLGWVNSKQPVQLMRIANLALVAIPGEPTTMVGRRLQSAVLDELKDSGVNTVIVNGLANNYSGYVATREEYA LQHYEGASTEYGPYQSNAYVQEYVQLARALKHNQPLKNHTAPPSIAAGKFAERPGVVFDDKPFNQAWGQVLMQPKQHYQK AEVVSVSFRGAHPKNNLRTEDTFLKVQRLVQGKWVDYLTDASFDTRYSWAREGITYSKVTIDWRIDEDTPSGTYRILHQG DWKNGWDGKITAYAGASYAFEVK >Mature_743_residues MLLTSLCATSALSLSLQTINCRNDSNPISLASSASAFYVKDNGSLENSQLSTSDRVAPIAASTHTGASHPQLKPNKAPYL LGAAQADITGAAAETGMFGYAAQQVAQGINDRLYAHAFIIVDNQADSAQTTQNSARIVYVSADMGAMFNAVRLEVLKRLH ALYGPLYTDANVMLTATHTHVGNAGYSHQRLYQIASKDDTTAGYSEQNFTAIVDGIVRAISKAHQNLTPGTLSLAQGKLT GATRNRSAAAYNNNPDAKAYDSNVNDTMTQLRLDDQNGKPLGAINWFAIHPTSFSNQFMYLSADNKGYAQQGMQAAITKK TGQPFVAAFANADEGDVVAAGGNAHSSAGFEGEDEEWHNVVRDGSLQLNKALELWDKAEPVVGPIDTRARWIDLNGYVVD AQYTHGAGEQRLCVPARGYAFAAGAENGPSDIPGIYEGMTKDSLSITDKINKTDTSILGSATRAAFGVVGAVSQDPCQAE KPVLLPTGKLGWVNSKQPVQLMRIANLALVAIPGEPTTMVGRRLQSAVLDELKDSGVNTVIVNGLANNYSGYVATREEYA LQHYEGASTEYGPYQSNAYVQEYVQLARALKHNQPLKNHTAPPSIAAGKFAERPGVVFDDKPFNQAWGQVLMQPKQHYQK AEVVSVSFRGAHPKNNLRTEDTFLKVQRLVQGKWVDYLTDASFDTRYSWAREGITYSKVTIDWRIDEDTPSGTYRILHQG DWKNGWDGKITAYAGASYAFEVK
Specific function: Hydrolyzes the ceramides into sphingosine and free fatty acid at an optimal pH of 8-9 [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the neutral ceramidase family [H]
Homologues:
Organism=Homo sapiens, GI221218981, Length=739, Percent_Identity=34.6414073071719, Blast_Score=355, Evalue=7e-98, Organism=Homo sapiens, GI221307475, Length=721, Percent_Identity=34.119278779473, Blast_Score=340, Evalue=3e-93, Organism=Homo sapiens, GI118442845, Length=133, Percent_Identity=33.8345864661654, Blast_Score=67, Evalue=9e-11, Organism=Drosophila melanogaster, GI24651405, Length=712, Percent_Identity=31.1797752808989, Blast_Score=315, Evalue=8e-86, Organism=Drosophila melanogaster, GI24651403, Length=712, Percent_Identity=31.1797752808989, Blast_Score=315, Evalue=8e-86, Organism=Drosophila melanogaster, GI24651401, Length=712, Percent_Identity=31.1797752808989, Blast_Score=315, Evalue=8e-86, Organism=Drosophila melanogaster, GI24651397, Length=712, Percent_Identity=31.1797752808989, Blast_Score=315, Evalue=8e-86, Organism=Drosophila melanogaster, GI24651399, Length=712, Percent_Identity=31.1797752808989, Blast_Score=315, Evalue=8e-86,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006823 [H]
Pfam domain/function: NA
EC number: =3.5.1.23 [H]
Molecular weight: Translated: 80401; Mature: 80401
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00287 CYSTATIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLTSLCATSALSLSLQTINCRNDSNPISLASSASAFYVKDNGSLENSQLSTSDRVAPIA CCHHHHHHHHHHEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEE ASTHTGASHPQLKPNKAPYLLGAAQADITGAAAETGMFGYAAQQVAQGINDRLYAHAFII ECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEEEEE VDNQADSAQTTQNSARIVYVSADMGAMFNAVRLEVLKRLHALYGPLYTDANVMLTATHTH EECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE VGNAGYSHQRLYQIASKDDTTAGYSEQNFTAIVDGIVRAISKAHQNLTPGTLSLAQGKLT CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC GATRNRSAAAYNNNPDAKAYDSNVNDTMTQLRLDDQNGKPLGAINWFAIHPTSFSNQFMY CCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCEEEE LSADNKGYAQQGMQAAITKKTGQPFVAAFANADEGDVVAAGGNAHSSAGFEGEDEEWHNV EECCCCCHHHHCCCEEEHHCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHH VRDGSLQLNKALELWDKAEPVVGPIDTRARWIDLNGYVVDAQYTHGAGEQRLCVPARGYA HHCCCEEHHHHHHHHHCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEEECCCCE FAAGAENGPSDIPGIYEGMTKDSLSITDKINKTDTSILGSATRAAFGVVGAVSQDPCQAE EECCCCCCCCCCCHHHHCCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC KPVLLPTGKLGWVNSKQPVQLMRIANLALVAIPGEPTTMVGRRLQSAVLDELKDSGVNTV CCEEEECCCCCCCCCCCCHHHHEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEE IVNGLANNYSGYVATREEYALQHYEGASTEYGPYQSNAYVQEYVQLARALKHNQPLKNHT EEECCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC APPSIAAGKFAERPGVVFDDKPFNQAWGQVLMQPKQHYQKAEVVSVSFRGAHPKNNLRTE CCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCHHHHCCCEEEEEEEEECCCCCCCCCCH DTFLKVQRLVQGKWVDYLTDASFDTRYSWAREGITYSKVTIDWRIDEDTPSGTYRILHQG HHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEECC DWKNGWDGKITAYAGASYAFEVK CCCCCCCCEEEEEECCEEEEEEC >Mature Secondary Structure MLLTSLCATSALSLSLQTINCRNDSNPISLASSASAFYVKDNGSLENSQLSTSDRVAPIA CCHHHHHHHHHHEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEE ASTHTGASHPQLKPNKAPYLLGAAQADITGAAAETGMFGYAAQQVAQGINDRLYAHAFII ECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEEEEE VDNQADSAQTTQNSARIVYVSADMGAMFNAVRLEVLKRLHALYGPLYTDANVMLTATHTH EECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE VGNAGYSHQRLYQIASKDDTTAGYSEQNFTAIVDGIVRAISKAHQNLTPGTLSLAQGKLT CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC GATRNRSAAAYNNNPDAKAYDSNVNDTMTQLRLDDQNGKPLGAINWFAIHPTSFSNQFMY CCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCEEEE LSADNKGYAQQGMQAAITKKTGQPFVAAFANADEGDVVAAGGNAHSSAGFEGEDEEWHNV EECCCCCHHHHCCCEEEHHCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHH VRDGSLQLNKALELWDKAEPVVGPIDTRARWIDLNGYVVDAQYTHGAGEQRLCVPARGYA HHCCCEEHHHHHHHHHCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEEECCCCE FAAGAENGPSDIPGIYEGMTKDSLSITDKINKTDTSILGSATRAAFGVVGAVSQDPCQAE EECCCCCCCCCCCHHHHCCCCCCCEEHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC KPVLLPTGKLGWVNSKQPVQLMRIANLALVAIPGEPTTMVGRRLQSAVLDELKDSGVNTV CCEEEECCCCCCCCCCCCHHHHEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEE IVNGLANNYSGYVATREEYALQHYEGASTEYGPYQSNAYVQEYVQLARALKHNQPLKNHT EEECCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC APPSIAAGKFAERPGVVFDDKPFNQAWGQVLMQPKQHYQKAEVVSVSFRGAHPKNNLRTE CCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCHHHHCCCEEEEEEEEECCCCCCCCCCH DTFLKVQRLVQGKWVDYLTDASFDTRYSWAREGITYSKVTIDWRIDEDTPSGTYRILHQG HHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEECC DWKNGWDGKITAYAGASYAFEVK CCCCCCCCEEEEEECCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10593963; 10984043 [H]