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The map label for this gene is yomI [H]

Identifier: 148653668

GI number: 148653668

Start: 2327599

End: 2328444

Strand: Direct

Name: yomI [H]

Synonym: PsycPRwf_1871

Alternate gene names: 148653668

Gene position: 2327599-2328444 (Clockwise)

Preceding gene: 148653667

Following gene: 148653672

Centisome position: 78.13

GC content: 43.85

Gene sequence:

>846_bases
ATGACTGAATTGTTAAATACAGTTTTAGCTCGTTCAGCCAGTTTGGTTGCCACAACGTTATTATGCGCCTCTCCCTTATT
GAGCGCTCATGCAGGCAACATGTACGTCTACAAGGATGATTCAGGGCAGGTTTTATTGACCAATGTAAAACCTTCAGATA
ACAGTAAGTTCGCCAAGAAGGTACAAGTCACTTACGCCCCCGCGTCGCAAACTGACACCCTTATGCAATCCAATACCCTA
ACCCTTAATCCACCCAGTTATTACAGTAATAATAGTAATAACAGCAGCTCAAACCTAAATACTATTGGCTCAGGCAACAA
TGCCTATGACCATTATATTTTGGCCTCTGCCAATCGAAATGGTATTGATCCTGGCCTATTAAAAGCCATGATGCATACCG
AATCTTCTTTTAACCCCAACGCCCGTTCTCCTGTTGGCGCTCAAGGCTTGATGCAGCTTATGCCAGCCACTGCCCGCCGA
TTTTCGGTCATAAATGCTTGGAATCCTGCAGAGAATATTGAAGGCGCAGCCAAATATGTGGCTTGGTTAAGTAAGCGCTT
TAATGGCAAGATTGAGCACATCTTAGCAGGCTATAATGCAGGTGAAGGCAATGTGGATAAATATGGCGGTGTGCCTCCGT
TTAGAGAGACGCGTAATTACGTTCAAAGAGTGCTCAATCGTTATAATACTTTATACAAAAATGACAGCTCTTTATTTAGA
GCTGGTGCAACTACCGTATCTTCAGAAGTGGGCATTCAACGTGCTACGTATGGTGCAGGTGCTACCTCCTTTGGTACCAC
GAGCAATGGATATACTCAAGCATCGTTTGAGACCACTTTACGTTAA

Upstream 100 bases:

>100_bases
TGCTTAAAAGCTAAGTGCAGGCAGTGTCTGATATAGCACTTGCCCCTTCCTACTGCTTCACCATAAAAAATTATATAGCC
TCTAAAAAGTGAAAATACTT

Downstream 100 bases:

>100_bases
TCACGCCCATCATTACCTGATGAGATATATCAGTTAAGCCAGATGTATGCGTTAAAACGTCACAAAAAAAGGACGCCTAA
TATTAAGGCGTCCTTTTTTT

Product: lytic transglycosylase subunit

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MTELLNTVLARSASLVATTLLCASPLLSAHAGNMYVYKDDSGQVLLTNVKPSDNSKFAKKVQVTYAPASQTDTLMQSNTL
TLNPPSYYSNNSNNSSSNLNTIGSGNNAYDHYILASANRNGIDPGLLKAMMHTESSFNPNARSPVGAQGLMQLMPATARR
FSVINAWNPAENIEGAAKYVAWLSKRFNGKIEHILAGYNAGEGNVDKYGGVPPFRETRNYVQRVLNRYNTLYKNDSSLFR
AGATTVSSEVGIQRATYGAGATSFGTTSNGYTQASFETTLR

Sequences:

>Translated_281_residues
MTELLNTVLARSASLVATTLLCASPLLSAHAGNMYVYKDDSGQVLLTNVKPSDNSKFAKKVQVTYAPASQTDTLMQSNTL
TLNPPSYYSNNSNNSSSNLNTIGSGNNAYDHYILASANRNGIDPGLLKAMMHTESSFNPNARSPVGAQGLMQLMPATARR
FSVINAWNPAENIEGAAKYVAWLSKRFNGKIEHILAGYNAGEGNVDKYGGVPPFRETRNYVQRVLNRYNTLYKNDSSLFR
AGATTVSSEVGIQRATYGAGATSFGTTSNGYTQASFETTLR
>Mature_280_residues
TELLNTVLARSASLVATTLLCASPLLSAHAGNMYVYKDDSGQVLLTNVKPSDNSKFAKKVQVTYAPASQTDTLMQSNTLT
LNPPSYYSNNSNNSSSNLNTIGSGNNAYDHYILASANRNGIDPGLLKAMMHTESSFNPNARSPVGAQGLMQLMPATARRF
SVINAWNPAENIEGAAKYVAWLSKRFNGKIEHILAGYNAGEGNVDKYGGVPPFRETRNYVQRVLNRYNTLYKNDSSLFRA
GATTVSSEVGIQRATYGAGATSFGTTSNGYTQASFETTLR

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 30339; Mature: 30208

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELLNTVLARSASLVATTLLCASPLLSAHAGNMYVYKDDSGQVLLTNVKPSDNSKFAKK
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCEEE
VQVTYAPASQTDTLMQSNTLTLNPPSYYSNNSNNSSSNLNTIGSGNNAYDHYILASANRN
EEEEECCCCCCHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
GIDPGLLKAMMHTESSFNPNARSPVGAQGLMQLMPATARRFSVINAWNPAENIEGAAKYV
CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
AWLSKRFNGKIEHILAGYNAGEGNVDKYGGVPPFRETRNYVQRVLNRYNTLYKNDSSLFR
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
AGATTVSSEVGIQRATYGAGATSFGTTSNGYTQASFETTLR
HCCHHHHHHHCCCCEECCCCCCCCCCCCCCEEEECHHCCCC
>Mature Secondary Structure 
TELLNTVLARSASLVATTLLCASPLLSAHAGNMYVYKDDSGQVLLTNVKPSDNSKFAKK
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCEEE
VQVTYAPASQTDTLMQSNTLTLNPPSYYSNNSNNSSSNLNTIGSGNNAYDHYILASANRN
EEEEECCCCCCHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
GIDPGLLKAMMHTESSFNPNARSPVGAQGLMQLMPATARRFSVINAWNPAENIEGAAKYV
CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
AWLSKRFNGKIEHILAGYNAGEGNVDKYGGVPPFRETRNYVQRVLNRYNTLYKNDSSLFR
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
AGATTVSSEVGIQRATYGAGATSFGTTSNGYTQASFETTLR
HCCHHHHHHHCCCCEECCCCCCCCCCCCCCEEEECHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]