| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is asd [H]
Identifier: 148653588
GI number: 148653588
Start: 2221096
End: 2222238
Strand: Direct
Name: asd [H]
Synonym: PsycPRwf_1791
Alternate gene names: 148653588
Gene position: 2221096-2222238 (Clockwise)
Preceding gene: 148653586
Following gene: 148653601
Centisome position: 74.56
GC content: 49.52
Gene sequence:
>1143_bases ATGAGTCAATTAAAAGTAGGTCTTGTTGGATGGCGTGGCATGGTAGGTTCTGTGCTTATGCAGCGTATGGTAGAGGAAAA TGATTTTGCAAATATCACCCCCATTTTCTTTTCGACCAGTAACGCCGGTGGTGATGCACCAAGCTTTGAGGGCGTCACGC ACACCGAAGACAGTGCTACACTAAAAGATGCTCATGATATCGAAGCGCTCAGCAGCTGTGACGTGATTATCACTTGTCAA GGCGGCGACTACACAAAAGCGGTACATGGCCCACTGCGTGATTCAGGTTGGCAAGGTTACTGGGTCGATGCCGCCAGCAG CCTACGCATGGAGCAAGATAGCGTCATTATCCTAGATCCGGTTAACCGCTCAGTTATCGATGAGGCGCTACAACAAGGTA CCAAAGACTTTATCGGTGGTAACTGTACAGTATCACTGATGCTGATGGCCATTGGCGAGTTATTCAACCGTGGCTGGGTG GAGTGGGTATCAGCCATGACCTACCAAGCCGCCAGTGGCTCAGGTGCCAACAACATGCGCGAGCTCATCAGTGGCATGGG ATTATTACGCGACTCAGTCGCTGACGAGTTGGCCAATCCTGCCAGCGCCATCTTGGCCATTGATAAAAAAATTGCCGAAA CTCAGCGCAGCGACAGCTTCCCTACCCAGTACTTTGGGGTTCCACTCGCCGGCAGCTTAATTCCTTATATTGACAGCCAG CTTGAAAACAAGCAATCTCGTGAAGAATGGAAAGGCGGCGTTGAAACCAACAAAATTCTAAACAACCAAGGTGCGGATAT TATCCCAATCGATGGTCTATGCGTTCGTGTTGGCTCAATGCGTTGCCATGCTCAAGGCTTAACCATTAAGCTAAAACAAG ATATCCCACTAGAGGAAATTGAAGCGGCATTAAAGAACAGCGGTAATCAATGGTTAGACTTCGTAGAAGATGACAAAGAG CAGACCATGCAGCGTCTGACGCCTGTCGCCGTTACCGGTACCTTAACCGTGGCACTTGGCCGTCTACGTAAGCTTAATAT GGGACCTGAGTACCTAGGTGCCTTCACTGTTGGTGACCAACTACTGTGGGGTGCTGCAGAGCCTTTACGCCGTATGCTTA ACATCATTCAGCAGCAAGGCTAA
Upstream 100 bases:
>100_bases ACTGTATTTTGTAGCCAAGCTCTGCCGCTTATTGAGCAAATCTGAGCACAGCGTTATTCATTAAATAAATCATTTTAGGC GAATACACAAGGGGTATTTC
Downstream 100 bases:
>100_bases GCCCTACTACATTACAGATTAGCTGGATTATTGACATTTGATCCCAAACAAAAACCCCTAGCATTGCTAGGGGTTTTTGT TTGATTCACTGTTTAATTGT
Product: aspartate-semialdehyde dehydrogenase
Products: NA
Alternate protein names: ASA dehydrogenase; ASADH [H]
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MSQLKVGLVGWRGMVGSVLMQRMVEENDFANITPIFFSTSNAGGDAPSFEGVTHTEDSATLKDAHDIEALSSCDVIITCQ GGDYTKAVHGPLRDSGWQGYWVDAASSLRMEQDSVIILDPVNRSVIDEALQQGTKDFIGGNCTVSLMLMAIGELFNRGWV EWVSAMTYQAASGSGANNMRELISGMGLLRDSVADELANPASAILAIDKKIAETQRSDSFPTQYFGVPLAGSLIPYIDSQ LENKQSREEWKGGVETNKILNNQGADIIPIDGLCVRVGSMRCHAQGLTIKLKQDIPLEEIEAALKNSGNQWLDFVEDDKE QTMQRLTPVAVTGTLTVALGRLRKLNMGPEYLGAFTVGDQLLWGAAEPLRRMLNIIQQQG
Sequences:
>Translated_380_residues MSQLKVGLVGWRGMVGSVLMQRMVEENDFANITPIFFSTSNAGGDAPSFEGVTHTEDSATLKDAHDIEALSSCDVIITCQ GGDYTKAVHGPLRDSGWQGYWVDAASSLRMEQDSVIILDPVNRSVIDEALQQGTKDFIGGNCTVSLMLMAIGELFNRGWV EWVSAMTYQAASGSGANNMRELISGMGLLRDSVADELANPASAILAIDKKIAETQRSDSFPTQYFGVPLAGSLIPYIDSQ LENKQSREEWKGGVETNKILNNQGADIIPIDGLCVRVGSMRCHAQGLTIKLKQDIPLEEIEAALKNSGNQWLDFVEDDKE QTMQRLTPVAVTGTLTVALGRLRKLNMGPEYLGAFTVGDQLLWGAAEPLRRMLNIIQQQG >Mature_379_residues SQLKVGLVGWRGMVGSVLMQRMVEENDFANITPIFFSTSNAGGDAPSFEGVTHTEDSATLKDAHDIEALSSCDVIITCQG GDYTKAVHGPLRDSGWQGYWVDAASSLRMEQDSVIILDPVNRSVIDEALQQGTKDFIGGNCTVSLMLMAIGELFNRGWVE WVSAMTYQAASGSGANNMRELISGMGLLRDSVADELANPASAILAIDKKIAETQRSDSFPTQYFGVPLAGSLIPYIDSQL ENKQSREEWKGGVETNKILNNQGADIIPIDGLCVRVGSMRCHAQGLTIKLKQDIPLEEIEAALKNSGNQWLDFVEDDKEQ TMQRLTPVAVTGTLTVALGRLRKLNMGPEYLGAFTVGDQLLWGAAEPLRRMLNIIQQQG
Specific function: Second step in the common biosynthetic pathway leading from Asp to the cell wall precursor meso-diaminopimelate, to Lys, to Met, to Ile and to Thr. [C]
COG id: COG0136
COG function: function code E; Aspartate-semialdehyde dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate-semialdehyde dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789841, Length=368, Percent_Identity=63.8586956521739, Blast_Score=483, Evalue=1e-138,
Paralogues:
None
Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000319 - InterPro: IPR011534 - InterPro: IPR012080 - InterPro: IPR016040 - InterPro: IPR000534 - InterPro: IPR012280 [H]
Pfam domain/function: PF01118 Semialdhyde_dh; PF02774 Semialdhyde_dhC [H]
EC number: =1.2.1.11 [H]
Molecular weight: Translated: 41359; Mature: 41228
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: PS01103 ASD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLKVGLVGWRGMVGSVLMQRMVEENDFANITPIFFSTSNAGGDAPSFEGVTHTEDSAT CCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC LKDAHDIEALSSCDVIITCQGGDYTKAVHGPLRDSGWQGYWVDAASSLRMEQDSVIILDP CCCHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCEEEECCHHHCEECCCCEEEECC VNRSVIDEALQQGTKDFIGGNCTVSLMLMAIGELFNRGWVEWVSAMTYQAASGSGANNMR CCHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHH ELISGMGLLRDSVADELANPASAILAIDKKIAETQRSDSFPTQYFGVPLAGSLIPYIDSQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHH LENKQSREEWKGGVETNKILNNQGADIIPIDGLCVRVGSMRCHAQGLTIKLKQDIPLEEI HHHHHHHHHHCCCCCHHHHHCCCCCCEEECCHHHHHHCCCEEEECCCEEEEECCCCHHHH EAALKNSGNQWLDFVEDDKEQTMQRLTPVAVTGTLTVALGRLRKLNMGPEYLGAFTVGDQ HHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH LLWGAAEPLRRMLNIIQQQG HHHCCHHHHHHHHHHHHCCC >Mature Secondary Structure SQLKVGLVGWRGMVGSVLMQRMVEENDFANITPIFFSTSNAGGDAPSFEGVTHTEDSAT CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC LKDAHDIEALSSCDVIITCQGGDYTKAVHGPLRDSGWQGYWVDAASSLRMEQDSVIILDP CCCHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCEEEECCHHHCEECCCCEEEECC VNRSVIDEALQQGTKDFIGGNCTVSLMLMAIGELFNRGWVEWVSAMTYQAASGSGANNMR CCHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHH ELISGMGLLRDSVADELANPASAILAIDKKIAETQRSDSFPTQYFGVPLAGSLIPYIDSQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHH LENKQSREEWKGGVETNKILNNQGADIIPIDGLCVRVGSMRCHAQGLTIKLKQDIPLEEI HHHHHHHHHHCCCCCHHHHHCCCCCCEEECCHHHHHHCCCEEEECCCEEEEECCCCHHHH EAALKNSGNQWLDFVEDDKEQTMQRLTPVAVTGTLTVALGRLRKLNMGPEYLGAFTVGDQ HHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH LLWGAAEPLRRMLNIIQQQG HHHCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9084174; 10984043 [H]