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The map label for this gene is ygiD [H]

Identifier: 148653562

GI number: 148653562

Start: 2185597

End: 2186367

Strand: Direct

Name: ygiD [H]

Synonym: PsycPRwf_1765

Alternate gene names: 148653562

Gene position: 2185597-2186367 (Clockwise)

Preceding gene: 148653561

Following gene: 148653563

Centisome position: 73.37

GC content: 49.16

Gene sequence:

>771_bases
ATGCAAGCGCTGGCCACATTGCCGGCGCTATTTATTTCGCATGGGGCGCCTACCTTTGCGCTTGAAAAAAGCGCCACCAC
CAATGCGCTGGCGCGTACTGGGCAAAACCTACCCAAACCCAAAGCTATTGTGATTATGTCAGCACACTGGGTCACTCAAA
CCCTTGAGATTGCCAGTAACCCTACACCGCAGACCTGGCATGATTTCTCAGGGTTTAGTCATGAGCTTAATCGCATTGAA
TACCCTGCTTTAGGCCATCCTGAGCTGGCCGAGTCACTATCAAATCAGCTTAATAAAATCGGCGTCATCAACAGTCTTAA
TCCACTGCGACCTTTAGATCACGGGGTATGGGTACCACTTCTTCATCTATATCCAGAAGCTGATGTGCCCATTGTGCAGC
TGTCATTACCCAAGCACTTCGACGCTTATGCCTGTTATCAATTGGGCAGCTTGTTTGAGCAGCTTCGCCATGAGCAAATC
TTAGTGATTGGTTCTGGCAGTATCACCCATAATCTGGCGGCCTTAAGTTGGAACGCTTCTAGTGAAGATGCCAGTGCCAA
AGCGTTTAAAGTCTGGCTACTGCACCAGTTAAAGACGGACATTCCAGCGGCTTTAGATTGGCAGCAGTTCGCTCAAGTGG
AGCAGGTTCACCCCAGTGCTGAGCATTTACTGCCCCTATTTTTTGCGCTGGGCTGCGGCCAACGGGTCTCGGTCATTCAT
GAAAGCATGTCACATCATAGCTTAGGCATGGATATGTACCGTTTTGATTAA

Upstream 100 bases:

>100_bases
AAATCGTACCCACAGCTCAACCTTTAGCCCAGTGACTGCCATCACAAGGCTCACAAGCTTTGAGCCAGTCACTAACAGTC
ACAAGCCAAAAGTGCGTTCT

Downstream 100 bases:

>100_bases
ACCCTGCCGGACAAGACACCCCCAGTGGCGTCATTTTTGTTAAAATAGACGGTTTTTATTGCCCCATTGTTATTTTAATA
ACTGCCATTTTTAATTTTTT

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MQALATLPALFISHGAPTFALEKSATTNALARTGQNLPKPKAIVIMSAHWVTQTLEIASNPTPQTWHDFSGFSHELNRIE
YPALGHPELAESLSNQLNKIGVINSLNPLRPLDHGVWVPLLHLYPEADVPIVQLSLPKHFDAYACYQLGSLFEQLRHEQI
LVIGSGSITHNLAALSWNASSEDASAKAFKVWLLHQLKTDIPAALDWQQFAQVEQVHPSAEHLLPLFFALGCGQRVSVIH
ESMSHHSLGMDMYRFD

Sequences:

>Translated_256_residues
MQALATLPALFISHGAPTFALEKSATTNALARTGQNLPKPKAIVIMSAHWVTQTLEIASNPTPQTWHDFSGFSHELNRIE
YPALGHPELAESLSNQLNKIGVINSLNPLRPLDHGVWVPLLHLYPEADVPIVQLSLPKHFDAYACYQLGSLFEQLRHEQI
LVIGSGSITHNLAALSWNASSEDASAKAFKVWLLHQLKTDIPAALDWQQFAQVEQVHPSAEHLLPLFFALGCGQRVSVIH
ESMSHHSLGMDMYRFD
>Mature_256_residues
MQALATLPALFISHGAPTFALEKSATTNALARTGQNLPKPKAIVIMSAHWVTQTLEIASNPTPQTWHDFSGFSHELNRIE
YPALGHPELAESLSNQLNKIGVINSLNPLRPLDHGVWVPLLHLYPEADVPIVQLSLPKHFDAYACYQLGSLFEQLRHEQI
LVIGSGSITHNLAALSWNASSEDASAKAFKVWLLHQLKTDIPAALDWQQFAQVEQVHPSAEHLLPLFFALGCGQRVSVIH
ESMSHHSLGMDMYRFD

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=35.4961832061069, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28370; Mature: 28370

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALATLPALFISHGAPTFALEKSATTNALARTGQNLPKPKAIVIMSAHWVTQTLEIASN
CCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCC
PTPQTWHDFSGFSHELNRIEYPALGHPELAESLSNQLNKIGVINSLNPLRPLDHGVWVPL
CCCCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
LHLYPEADVPIVQLSLPKHFDAYACYQLGSLFEQLRHEQILVIGSGSITHNLAALSWNAS
HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCEEEEEECCC
SEDASAKAFKVWLLHQLKTDIPAALDWQQFAQVEQVHPSAEHLLPLFFALGCGQRVSVIH
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH
ESMSHHSLGMDMYRFD
HHHHHHHCCCCHHCCC
>Mature Secondary Structure
MQALATLPALFISHGAPTFALEKSATTNALARTGQNLPKPKAIVIMSAHWVTQTLEIASN
CCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCC
PTPQTWHDFSGFSHELNRIEYPALGHPELAESLSNQLNKIGVINSLNPLRPLDHGVWVPL
CCCCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
LHLYPEADVPIVQLSLPKHFDAYACYQLGSLFEQLRHEQILVIGSGSITHNLAALSWNAS
HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCEEEEEECCC
SEDASAKAFKVWLLHQLKTDIPAALDWQQFAQVEQVHPSAEHLLPLFFALGCGQRVSVIH
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH
ESMSHHSLGMDMYRFD
HHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]