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The map label for this gene is ydaL [H]

Identifier: 148653446

GI number: 148653446

Start: 2037904

End: 2038632

Strand: Direct

Name: ydaL [H]

Synonym: PsycPRwf_1649

Alternate gene names: 148653446

Gene position: 2037904-2038632 (Clockwise)

Preceding gene: 148653445

Following gene: 148653448

Centisome position: 68.41

GC content: 45.13

Gene sequence:

>729_bases
ATGGCAAATTCATTATTTTCAAAAGAGATGCAAGACCAGCTCAAAGAGCTAAAAAGCGAACTTAGCAAAGGCCGTGCTAC
CTCTCCTAGCGATCCTGAGAATGAAAAACCCACTGATCCTGTTACCCTACCGACCAAAAAACAGGTCGAAAAAACCGTTA
AGCAATTAGACAGCGCTCATGTTGATGATGACAAAGTGCTGTTTATGCAGGCCATGGCAGGTGTTCAGCCCATCAAAGAC
AACAACACCTTATCGGATGTGGCCAAGCCCAAATCAACCAAACCTGACGCAGCCACGTTATCAAAGCGTGCAGCGGCTCA
AGGCGCTGACTCTGAAAAGTTAGAAGCGGGATTGTCAGACATGCAGGCACTATTAAACCCTGTGAGCGGCGACTCTTATC
TTATTTATAAAACCCCAACGCTACAAAACAAAGTCTTCACTCAGTTAAAACAAGGCAAATTACGCTGGTATGATGCTGTA
GACGTGCACGGCTGTACTATTGATGAGGCGCGTGAAGCCATGACTACCTTGATTACGCAGGCACGTAGCAATAATGAATC
TGTGGTAAAAATCGTCCATGGTAAAGGTACTGATGCGGTTCTAAAAACTTGCGTTAACGGCTGGCTACGCCAATTACCCG
AAGTTCTAGGCTTTTGCTCAGCTCCGCCAAAAGATGGTGGCAATGGCGCTGTACTGGTGTTATTAAAGAAAAATAAATCA
CAAGACTAA

Upstream 100 bases:

>100_bases
TGAAAACTGAGCATCCGGGCGACACCCTAGCCGCCCTACTCAGCTCACTGTAAGAGCGATAACCTTCTAAATTCATTTAA
TATAAGTGGTACCTACTACT

Downstream 100 bases:

>100_bases
CGCTCTAGCAACAAGCTATTTTTTGTCATACAGCCTTAGCGCTTTACGCTACAAATGTTAAGCATAAAAAAAGCCACTAT
CTACAATAGTGGCTTTTTTT

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MANSLFSKEMQDQLKELKSELSKGRATSPSDPENEKPTDPVTLPTKKQVEKTVKQLDSAHVDDDKVLFMQAMAGVQPIKD
NNTLSDVAKPKSTKPDAATLSKRAAAQGADSEKLEAGLSDMQALLNPVSGDSYLIYKTPTLQNKVFTQLKQGKLRWYDAV
DVHGCTIDEAREAMTTLITQARSNNESVVKIVHGKGTDAVLKTCVNGWLRQLPEVLGFCSAPPKDGGNGAVLVLLKKNKS
QD

Sequences:

>Translated_242_residues
MANSLFSKEMQDQLKELKSELSKGRATSPSDPENEKPTDPVTLPTKKQVEKTVKQLDSAHVDDDKVLFMQAMAGVQPIKD
NNTLSDVAKPKSTKPDAATLSKRAAAQGADSEKLEAGLSDMQALLNPVSGDSYLIYKTPTLQNKVFTQLKQGKLRWYDAV
DVHGCTIDEAREAMTTLITQARSNNESVVKIVHGKGTDAVLKTCVNGWLRQLPEVLGFCSAPPKDGGNGAVLVLLKKNKS
QD
>Mature_241_residues
ANSLFSKEMQDQLKELKSELSKGRATSPSDPENEKPTDPVTLPTKKQVEKTVKQLDSAHVDDDKVLFMQAMAGVQPIKDN
NTLSDVAKPKSTKPDAATLSKRAAAQGADSEKLEAGLSDMQALLNPVSGDSYLIYKTPTLQNKVFTQLKQGKLRWYDAVD
VHGCTIDEAREAMTTLITQARSNNESVVKIVHGKGTDAVLKTCVNGWLRQLPEVLGFCSAPPKDGGNGAVLVLLKKNKSQ
D

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=180, Percent_Identity=28.3333333333333, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788671, Length=178, Percent_Identity=29.7752808988764, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 26278; Mature: 26147

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSLFSKEMQDQLKELKSELSKGRATSPSDPENEKPTDPVTLPTKKQVEKTVKQLDSAH
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
VDDDKVLFMQAMAGVQPIKDNNTLSDVAKPKSTKPDAATLSKRAAAQGADSEKLEAGLSD
CCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
MQALLNPVSGDSYLIYKTPTLQNKVFTQLKQGKLRWYDAVDVHGCTIDEAREAMTTLITQ
HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHH
ARSNNESVVKIVHGKGTDAVLKTCVNGWLRQLPEVLGFCSAPPKDGGNGAVLVLLKKNKS
HCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
QD
CC
>Mature Secondary Structure 
ANSLFSKEMQDQLKELKSELSKGRATSPSDPENEKPTDPVTLPTKKQVEKTVKQLDSAH
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
VDDDKVLFMQAMAGVQPIKDNNTLSDVAKPKSTKPDAATLSKRAAAQGADSEKLEAGLSD
CCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
MQALLNPVSGDSYLIYKTPTLQNKVFTQLKQGKLRWYDAVDVHGCTIDEAREAMTTLITQ
HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHH
ARSNNESVVKIVHGKGTDAVLKTCVNGWLRQLPEVLGFCSAPPKDGGNGAVLVLLKKNKS
HCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
QD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]