| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is btuB [H]
Identifier: 148653448
GI number: 148653448
Start: 2040776
End: 2042722
Strand: Direct
Name: btuB [H]
Synonym: PsycPRwf_1651
Alternate gene names: 148653448
Gene position: 2040776-2042722 (Clockwise)
Preceding gene: 148653446
Following gene: 148653453
Centisome position: 68.51
GC content: 39.65
Gene sequence:
>1947_bases ATGAAAACCTCTTACAGCCCTTTGTATCGCAGTGTTGTTACCGCTTTGGCATCTTCTAACTTGACCCCAAAAGCTTTGAC TATAGTGTCTGCTCTTGCAGTTTGTATGCCTGCTATGGCCGCTCAAAATCAAGGGGAAGTGGATGCTGAGCAGCCTAGAA TAAATTTTCCAGCGATTACGGTTACTGCAACCCGCACACCGACTGCTGTGAATAACACCATTGCCCAAACTCGTGTTATT GATAGCCAAGAGTTAAGTACTTATAAAGGCCAAACAGTGCTTGATGTTTTAAAGCGTCAGCCGGGCTTTAGTTACTATCA AAGTGGTGGCATGGGAACAAAAAGCAGTTTTTATCTGCGTGGCTATGATAGCCAAAGTATTTTAGTACTGATTGATGGCA TTCGCTACAATGCAGCTTCTACAGGGCGTGCTGCTCTTGAACTATTTCCTGCAGACCAAATCGATCATATAGAGATTTTG TATGGTGCTTCTGGTTCTAGTATCTATGGTGCGGATGCGGTAGGTGGCGTTATTCAGATCTTTACCAAAGGTCAAAATGT TGATCAAAATCAATTCTCGGTAACCGCTGGTGCTGGTAGTAATGACCACTATCTGTATGGCGCTTCAGCTCAGATGCGTA ATGAAAAAGGCAGTAGCTTAAGCTTAGCAGCTAGCCGTAATCAAACTAAAGGGATTGATGCTATAAAATCAGGCGGTGAT GCTTATAAAGATGATGATGGTTTTAATTCTAACAATTTCAGCTTATCTATGCAGCATAAACTTAACGATGCTGTGACTAT TGGTGCAAATGGCATATATGCTAAATCAAATACAGAATACGACTCTGGTTCTACTTTTATAGATGCAAACCAAGACAATA AAAATTATGTATTTAATACTTTTATAGATATAGAAAATAAGGGTTTAAATACCAAACTTCAATATGGTGAAAGTACGGAC AAAAGAGTCAATTTCGATAAAAACTCACCTAATGGCAGTTTCTTTGACACAAAAGATAAACAAGCTAACTTGCAGTTAAC TTACCCTACTAATATGGGCACTTTGACTGGTGGTGCAGAATGGTTAAGACAGGAAGCAGATACTAGCTTATATGCTGGGT CACATGAACGTAAAATAAAGAGTATTTTTACAGGCTATTTGCTAAATACCGATCAGTTTGATGCACAAGCTAATGTGCGC TATGATGATAACTCTCAGTTTGGGTCAGAGACCACCTATAATGTTGGAGGCGCATATAAATTTAGCCCTGAGCTTCGCGC TGGTGCTTCTTTTTCAACGGGTTTTAGAGCGCCGTCCTTAGATACAATGTACGATAACTTTAGCGGTAACCCTAACTTAA AGCCAGAGACCTCTGATAACTACGAAGTTTTTATTGAGAAGAGTGATGACCATCACAAAACTCGTTTGACAGGCTATTAC TCAGATGTAGAAGACCTAATTGACTATGATGGTGGCAATAACTGGAGAATGGGTAACATTGATAAGGCGCGTATTAAAGG CATAACTCTGGTTTCTGACTGGATCGTAAATCAGTATATCTTTGGAATGAACTACGACTACCAAGATGCTAAGAACCTTT CTGGTGATTTCAAAGGTGAACAAATTAAGTTTCGCCCAAAGCATAAGGGCTTGGTATACGCAGGCTACAGAAATTCAGAA TTTGATGTTCGTGCAGAAGTGCAGCATATTGGTAAGCGCTATGCGCTTGATGGTGAGTGGTATGGCCCAACCAGACTAGG GACTAAAATGCAACATGCTAATCTTGTTAACTTAAGTGCAAACTATTATGTATCCCCTAATTTGACCATTAACTCACAGA TTAATAACTTATTTAATAAAGAGTATACGTCAATTGATACCTATGGGACTCGTTATAATGAAGACGGCACCAACTTCTTT ACCTCACTAACCTACACCTGGAAATAA
Upstream 100 bases:
>100_bases AGTAAAAATCGCTTAATTGTTGTTTATTTTTTAATTAGATACGGGATAATAGCCACATTATTTCTTAAGTGTTATTTTAT TTAAACGATTGGAACCAGAC
Downstream 100 bases:
>100_bases TCCCTTTCACATTGTTACCCTTTTATCAAAAAAACCACTCGCTTAAGCGGGTGGTTTTTTTTATAGAAGAAAAAAGTTTT TTATTGATGCGCTGCCTTTA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 648; Mature: 648
Protein sequence:
>648_residues MKTSYSPLYRSVVTALASSNLTPKALTIVSALAVCMPAMAAQNQGEVDAEQPRINFPAITVTATRTPTAVNNTIAQTRVI DSQELSTYKGQTVLDVLKRQPGFSYYQSGGMGTKSSFYLRGYDSQSILVLIDGIRYNAASTGRAALELFPADQIDHIEIL YGASGSSIYGADAVGGVIQIFTKGQNVDQNQFSVTAGAGSNDHYLYGASAQMRNEKGSSLSLAASRNQTKGIDAIKSGGD AYKDDDGFNSNNFSLSMQHKLNDAVTIGANGIYAKSNTEYDSGSTFIDANQDNKNYVFNTFIDIENKGLNTKLQYGESTD KRVNFDKNSPNGSFFDTKDKQANLQLTYPTNMGTLTGGAEWLRQEADTSLYAGSHERKIKSIFTGYLLNTDQFDAQANVR YDDNSQFGSETTYNVGGAYKFSPELRAGASFSTGFRAPSLDTMYDNFSGNPNLKPETSDNYEVFIEKSDDHHKTRLTGYY SDVEDLIDYDGGNNWRMGNIDKARIKGITLVSDWIVNQYIFGMNYDYQDAKNLSGDFKGEQIKFRPKHKGLVYAGYRNSE FDVRAEVQHIGKRYALDGEWYGPTRLGTKMQHANLVNLSANYYVSPNLTINSQINNLFNKEYTSIDTYGTRYNEDGTNFF TSLTYTWK
Sequences:
>Translated_648_residues MKTSYSPLYRSVVTALASSNLTPKALTIVSALAVCMPAMAAQNQGEVDAEQPRINFPAITVTATRTPTAVNNTIAQTRVI DSQELSTYKGQTVLDVLKRQPGFSYYQSGGMGTKSSFYLRGYDSQSILVLIDGIRYNAASTGRAALELFPADQIDHIEIL YGASGSSIYGADAVGGVIQIFTKGQNVDQNQFSVTAGAGSNDHYLYGASAQMRNEKGSSLSLAASRNQTKGIDAIKSGGD AYKDDDGFNSNNFSLSMQHKLNDAVTIGANGIYAKSNTEYDSGSTFIDANQDNKNYVFNTFIDIENKGLNTKLQYGESTD KRVNFDKNSPNGSFFDTKDKQANLQLTYPTNMGTLTGGAEWLRQEADTSLYAGSHERKIKSIFTGYLLNTDQFDAQANVR YDDNSQFGSETTYNVGGAYKFSPELRAGASFSTGFRAPSLDTMYDNFSGNPNLKPETSDNYEVFIEKSDDHHKTRLTGYY SDVEDLIDYDGGNNWRMGNIDKARIKGITLVSDWIVNQYIFGMNYDYQDAKNLSGDFKGEQIKFRPKHKGLVYAGYRNSE FDVRAEVQHIGKRYALDGEWYGPTRLGTKMQHANLVNLSANYYVSPNLTINSQINNLFNKEYTSIDTYGTRYNEDGTNFF TSLTYTWK >Mature_648_residues MKTSYSPLYRSVVTALASSNLTPKALTIVSALAVCMPAMAAQNQGEVDAEQPRINFPAITVTATRTPTAVNNTIAQTRVI DSQELSTYKGQTVLDVLKRQPGFSYYQSGGMGTKSSFYLRGYDSQSILVLIDGIRYNAASTGRAALELFPADQIDHIEIL YGASGSSIYGADAVGGVIQIFTKGQNVDQNQFSVTAGAGSNDHYLYGASAQMRNEKGSSLSLAASRNQTKGIDAIKSGGD AYKDDDGFNSNNFSLSMQHKLNDAVTIGANGIYAKSNTEYDSGSTFIDANQDNKNYVFNTFIDIENKGLNTKLQYGESTD KRVNFDKNSPNGSFFDTKDKQANLQLTYPTNMGTLTGGAEWLRQEADTSLYAGSHERKIKSIFTGYLLNTDQFDAQANVR YDDNSQFGSETTYNVGGAYKFSPELRAGASFSTGFRAPSLDTMYDNFSGNPNLKPETSDNYEVFIEKSDDHHKTRLTGYY SDVEDLIDYDGGNNWRMGNIDKARIKGITLVSDWIVNQYIFGMNYDYQDAKNLSGDFKGEQIKFRPKHKGLVYAGYRNSE FDVRAEVQHIGKRYALDGEWYGPTRLGTKMQHANLVNLSANYYVSPNLTINSQINNLFNKEYTSIDTYGTRYNEDGTNFF TSLTYTWK
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG4206
COG function: function code H; Outer membrane cobalamin receptor protein
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=602, Percent_Identity=30.0664451827243, Blast_Score=226, Evalue=3e-60, Organism=Escherichia coli, GI1788478, Length=691, Percent_Identity=23.2995658465991, Blast_Score=104, Evalue=2e-23,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 71768; Mature: 71768
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSYSPLYRSVVTALASSNLTPKALTIVSALAVCMPAMAAQNQGEVDAEQPRINFPAIT CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE VTATRTPTAVNNTIAQTRVIDSQELSTYKGQTVLDVLKRQPGFSYYQSGGMGTKSSFYLR EEECCCCCHHCCCHHHEEEECCHHHHHCCCCHHHHHHHCCCCCCHHHCCCCCCCCEEEEE GYDSQSILVLIDGIRYNAASTGRAALELFPADQIDHIEILYGASGSSIYGADAVGGVIQI ECCCCEEEEEEECCEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCEECCHHHCCEEEE FTKGQNVDQNQFSVTAGAGSNDHYLYGASAQMRNEKGSSLSLAASRNQTKGIDAIKSGGD EECCCCCCCCCEEEEECCCCCCCEEEECCHHHCCCCCCEEEEEECCCCCCCCHHHHCCCC AYKDDDGFNSNNFSLSMQHKLNDAVTIGANGIYAKSNTEYDSGSTFIDANQDNKNYVFNT CCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEECCCCCCCCCCEEEECCCCCCCEEEEE FIDIENKGLNTKLQYGESTDKRVNFDKNSPNGSFFDTKDKQANLQLTYPTNMGTLTGGAE EEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHH WLRQEADTSLYAGSHERKIKSIFTGYLLNTDQFDAQANVRYDDNSQFGSETTYNVGGAYK HHHHHCCCCEECCCHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCCEEECCCEEE FSPELRAGASFSTGFRAPSLDTMYDNFSGNPNLKPETSDNYEVFIEKSDDHHKTRLTGYY ECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEH SDVEDLIDYDGGNNWRMGNIDKARIKGITLVSDWIVNQYIFGMNYDYQDAKNLSGDFKGE HHHHHHHHCCCCCCEEECCCCHHHEEEEEEEHHHHHHHEEECCCCCCCHHHCCCCCCCCC QIKFRPKHKGLVYAGYRNSEFDVRAEVQHIGKRYALDGEWYGPTRLGTKMQHANLVNLSA EEEECCCCCCEEEECCCCCCCCCHHHHHHCCHHEECCCCCCCCHHHCCCCCCCEEEEEEE NYYVSPNLTINSQINNLFNKEYTSIDTYGTRYNEDGTNFFTSLTYTWK EEEECCCCEECHHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEEEEEC >Mature Secondary Structure MKTSYSPLYRSVVTALASSNLTPKALTIVSALAVCMPAMAAQNQGEVDAEQPRINFPAIT CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE VTATRTPTAVNNTIAQTRVIDSQELSTYKGQTVLDVLKRQPGFSYYQSGGMGTKSSFYLR EEECCCCCHHCCCHHHEEEECCHHHHHCCCCHHHHHHHCCCCCCHHHCCCCCCCCEEEEE GYDSQSILVLIDGIRYNAASTGRAALELFPADQIDHIEILYGASGSSIYGADAVGGVIQI ECCCCEEEEEEECCEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCEECCHHHCCEEEE FTKGQNVDQNQFSVTAGAGSNDHYLYGASAQMRNEKGSSLSLAASRNQTKGIDAIKSGGD EECCCCCCCCCEEEEECCCCCCCEEEECCHHHCCCCCCEEEEEECCCCCCCCHHHHCCCC AYKDDDGFNSNNFSLSMQHKLNDAVTIGANGIYAKSNTEYDSGSTFIDANQDNKNYVFNT CCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEECCCCCCCCCCEEEECCCCCCCEEEEE FIDIENKGLNTKLQYGESTDKRVNFDKNSPNGSFFDTKDKQANLQLTYPTNMGTLTGGAE EEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHH WLRQEADTSLYAGSHERKIKSIFTGYLLNTDQFDAQANVRYDDNSQFGSETTYNVGGAYK HHHHHCCCCEECCCHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCCCCCEEECCCEEE FSPELRAGASFSTGFRAPSLDTMYDNFSGNPNLKPETSDNYEVFIEKSDDHHKTRLTGYY ECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEH SDVEDLIDYDGGNNWRMGNIDKARIKGITLVSDWIVNQYIFGMNYDYQDAKNLSGDFKGE HHHHHHHHCCCCCCEEECCCCHHHEEEEEEEHHHHHHHEEECCCCCCCHHHCCCCCCCCC QIKFRPKHKGLVYAGYRNSEFDVRAEVQHIGKRYALDGEWYGPTRLGTKMQHANLVNLSA EEEECCCCCCEEEECCCCCCCCCHHHHHHCCHHEECCCCCCCCHHHCCCCCCCEEEEEEE NYYVSPNLTINSQINNLFNKEYTSIDTYGTRYNEDGTNFFTSLTYTWK EEEECCCCEECHHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA