Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 148653428

GI number: 148653428

Start: 2016824

End: 2017216

Strand: Direct

Name: nifU [H]

Synonym: PsycPRwf_1630

Alternate gene names: 148653428

Gene position: 2016824-2017216 (Clockwise)

Preceding gene: 148653427

Following gene: 148653429

Centisome position: 67.7

GC content: 44.78

Gene sequence:

>393_bases
ATGGCTTATAGTAATCAAGTAATTGACCATTATGAAAATCCGCGTAACGTTGGTAATTTGGACAAAGACGCTAAGAACGT
AGGTACTGGTATGGTTGGTGCCCCAGCTTGTGGTGACGTTATGCGTCTACAAATCCAAGTTGGTGATGACGGTATCATTG
AAGATGCTCGCTTTAAAACTTATGGTTGCGGCTCAGCAATTGCCTCAAGCTCATTGGTCACTGAGTGGCTTAAAGGTAAA
ACGTTAGACCAAGCCTCTGAGATCAAAAATAAGCACATCGCAGAAGAGCTTGCCCTACCCCCAGTAAAAGTTCACTGCTC
AGTACTGGCAGAAGACGCTATTAAAGCGGCGATTGAAGATTATCGCGCCAAAAGCGGCACAGTGGAAGCTTAA

Upstream 100 bases:

>100_bases
CCGTTTTAGGACAGTAAATGTGCTATGTACGACCCTTTTAGACAGTATTGATTGAATACTGTTCCCTTATTTATCTAGGT
TAAACCCCAGGAGAAACACC

Downstream 100 bases:

>100_bases
GTTAGCGACCACTTAAAGCGTATCATTCATCACCTTGTCAGGCACAATGCTGTGACAAGGTGATGGCTTGAAGCTTGATG
GATTATCCCCATTAACGTTG

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MAYSNQVIDHYENPRNVGNLDKDAKNVGTGMVGAPACGDVMRLQIQVGDDGIIEDARFKTYGCGSAIASSSLVTEWLKGK
TLDQASEIKNKHIAEELALPPVKVHCSVLAEDAIKAAIEDYRAKSGTVEA

Sequences:

>Translated_130_residues
MAYSNQVIDHYENPRNVGNLDKDAKNVGTGMVGAPACGDVMRLQIQVGDDGIIEDARFKTYGCGSAIASSSLVTEWLKGK
TLDQASEIKNKHIAEELALPPVKVHCSVLAEDAIKAAIEDYRAKSGTVEA
>Mature_129_residues
AYSNQVIDHYENPRNVGNLDKDAKNVGTGMVGAPACGDVMRLQIQVGDDGIIEDARFKTYGCGSAIASSSLVTEWLKGKT
LDQASEIKNKHIAEELALPPVKVHCSVLAEDAIKAAIEDYRAKSGTVEA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI24307953, Length=122, Percent_Identity=74.5901639344262, Blast_Score=197, Evalue=3e-51,
Organism=Homo sapiens, GI56699456, Length=122, Percent_Identity=73.7704918032787, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1788878, Length=124, Percent_Identity=79.0322580645161, Blast_Score=213, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI17543474, Length=122, Percent_Identity=70.4918032786885, Blast_Score=189, Evalue=4e-49,
Organism=Saccharomyces cerevisiae, GI6325122, Length=126, Percent_Identity=69.0476190476191, Blast_Score=187, Evalue=3e-49,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=69.1056910569106, Blast_Score=183, Evalue=6e-48,
Organism=Drosophila melanogaster, GI21355597, Length=122, Percent_Identity=68.8524590163934, Blast_Score=186, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13905; Mature: 13774

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSNQVIDHYENPRNVGNLDKDAKNVGTGMVGAPACGDVMRLQIQVGDDGIIEDARFKT
CCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWLKGKTLDQASEIKNKHIAEELALPPVKVHCSVLAEDAIKAAIED
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YRAKSGTVEA
HHCCCCCCCC
>Mature Secondary Structure 
AYSNQVIDHYENPRNVGNLDKDAKNVGTGMVGAPACGDVMRLQIQVGDDGIIEDARFKT
CCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWLKGKTLDQASEIKNKHIAEELALPPVKVHCSVLAEDAIKAAIED
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YRAKSGTVEA
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]