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The map label for this gene is fis [H]

Identifier: 148653421

GI number: 148653421

Start: 2008625

End: 2008966

Strand: Direct

Name: fis [H]

Synonym: PsycPRwf_1623

Alternate gene names: 148653421

Gene position: 2008625-2008966 (Clockwise)

Preceding gene: 148653420

Following gene: 148653422

Centisome position: 67.43

GC content: 46.2

Gene sequence:

>342_bases
ATGAGTAACTCATCCCCCGCTTTTGGTAGTGGTGCTGCCCATGCTGCCAAGTATTACAATCAGAGCTCGATAGCACCTGA
GCCACAAGGCGTTGACTCTCACGCCCCCCAAGACCGTGCTCCTCTACGTCATCATGTTCAGCAAGCCGTTGAGCAGTATT
TTGTGGAATTAGAGGGCGAGTCTACGACCAACTTGTACCAAACCATTTTGCAAGAAGTAGAAAAACCTTTACTGCAAGTG
GTCCTCAAACAAACCCAAGGCAATCAGTCAAAAACAGCAAAAATCTTGGGGCTCAATCGAGGCACATTAAGAAAAAAAAT
GCAGCAGTATGATTTGATGTGA

Upstream 100 bases:

>100_bases
ACACAGCCCAGTAACTATCAAAAGCACAGCTGCAAAAGTAAGCAGCTGTGCAAATTTAACCACTCTCACGCTTTTTAACC
TTCATTGTACAGACTTAACT

Downstream 100 bases:

>100_bases
TAAAAACCTATCAAACGTTGTCTTTTAAGGCCAAATTTTTTGTCATACTAAATAAATTGCTCTAATATACTTCCTCGCTT
AATTTGCAAAGATTAAGTGT

Product: Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSNSSPAFGSGAAHAAKYYNQSSIAPEPQGVDSHAPQDRAPLRHHVQQAVEQYFVELEGESTTNLYQTILQEVEKPLLQV
VLKQTQGNQSKTAKILGLNRGTLRKKMQQYDLM

Sequences:

>Translated_113_residues
MSNSSPAFGSGAAHAAKYYNQSSIAPEPQGVDSHAPQDRAPLRHHVQQAVEQYFVELEGESTTNLYQTILQEVEKPLLQV
VLKQTQGNQSKTAKILGLNRGTLRKKMQQYDLM
>Mature_112_residues
SNSSPAFGSGAAHAAKYYNQSSIAPEPQGVDSHAPQDRAPLRHHVQQAVEQYFVELEGESTTNLYQTILQEVEKPLLQVV
LKQTQGNQSKTAKILGLNRGTLRKKMQQYDLM

Specific function: Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters [H]

COG id: COG2901

COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory fis family [H]

Homologues:

Organism=Escherichia coli, GI1789661, Length=80, Percent_Identity=46.25, Blast_Score=86, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005412
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 12567; Mature: 12436

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSSPAFGSGAAHAAKYYNQSSIAPEPQGVDSHAPQDRAPLRHHVQQAVEQYFVELEGE
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
STTNLYQTILQEVEKPLLQVVLKQTQGNQSKTAKILGLNRGTLRKKMQQYDLM
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNSSPAFGSGAAHAAKYYNQSSIAPEPQGVDSHAPQDRAPLRHHVQQAVEQYFVELEGE
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
STTNLYQTILQEVEKPLLQVVLKQTQGNQSKTAKILGLNRGTLRKKMQQYDLM
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA