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The map label for this gene is csrA

Identifier: 148653411

GI number: 148653411

Start: 1995520

End: 1995765

Strand: Direct

Name: csrA

Synonym: PsycPRwf_1613

Alternate gene names: 148653411

Gene position: 1995520-1995765 (Clockwise)

Preceding gene: 148653410

Following gene: 148653412

Centisome position: 66.99

GC content: 42.28

Gene sequence:

>246_bases
ATGTTAATTTTAACTCGCCGTGTGGGTGAAACTTTAATGGTTGGTGACGAGGTAAGTGTCACTGTATTGGGCGTTAAGGG
CAATCAAGTTCGTATTGGGGTTAATGCACCCAAAGATATCGCGGTGCACCGTGAAGAGATTTATCAGCGCATTCAACATG
AGCGTGCTATGCAGTCTCAAATGCAGCATTTAGAACAAGGTAACTTCCCTACCTCATTCGATGATGACGATTTTTTTAAT
AGATAG

Upstream 100 bases:

>100_bases
GGTCGCCTCTATTGAGGGCAAACTGAATGGGCAACATTATGACTATTTCATCATTTGGCATTTGCCAATTTTTTTTACTG
CGACATAAGGAGTGTGACGC

Downstream 100 bases:

>100_bases
CCTATAGCTTTTAGCGTATTATCTTTGTCAGCTATTTTTTTAGCTGACAAAGCGCCCAAGCTTACGGTTTTTATTGCGTA
TGACACTGCGCTTTTAACAG

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MLILTRRVGETLMVGDEVSVTVLGVKGNQVRIGVNAPKDIAVHREEIYQRIQHERAMQSQMQHLEQGNFPTSFDDDDFFN
R

Sequences:

>Translated_81_residues
MLILTRRVGETLMVGDEVSVTVLGVKGNQVRIGVNAPKDIAVHREEIYQRIQHERAMQSQMQHLEQGNFPTSFDDDDFFN
R
>Mature_81_residues
MLILTRRVGETLMVGDEVSVTVLGVKGNQVRIGVNAPKDIAVHREEIYQRIQHERAMQSQMQHLEQGNFPTSFDDDDFFN
R

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=59, Percent_Identity=84.7457627118644, Blast_Score=106, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_PSYWF (A5WFW3)

Other databases:

- EMBL:   CP000713
- RefSeq:   YP_001280504.1
- ProteinModelPortal:   A5WFW3
- SMR:   A5WFW3
- STRING:   A5WFW3
- GeneID:   5206715
- GenomeReviews:   CP000713_GR
- KEGG:   prw:PsycPRwf_1613
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- BioCyc:   PSP56811:PSYCPRWF_1613-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 9314; Mature: 9314

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRVGETLMVGDEVSVTVLGVKGNQVRIGVNAPKDIAVHREEIYQRIQHERAMQSQ
CEEEECCCCCEEEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
MQHLEQGNFPTSFDDDDFFNR
HHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLILTRRVGETLMVGDEVSVTVLGVKGNQVRIGVNAPKDIAVHREEIYQRIQHERAMQSQ
CEEEECCCCCEEEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
MQHLEQGNFPTSFDDDDFFNR
HHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA