| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is dld [H]
Identifier: 148652887
GI number: 148652887
Start: 1302634
End: 1304406
Strand: Direct
Name: dld [H]
Synonym: PsycPRwf_1080
Alternate gene names: 148652887
Gene position: 1302634-1304406 (Clockwise)
Preceding gene: 148652885
Following gene: 148652888
Centisome position: 43.73
GC content: 45.46
Gene sequence:
>1773_bases ATGAGCGATATTCAATCAGCAGGCAGTACGGATCATATTTTCCCCTCAAAGCGGGTGACTTTGGGTACACTGACGCCCGA TCAGGTGCTGCAACAGCTCACCCAACTGTTGGGTGCGGCTAATATACAAGCAGATCCCACAAAAAACGAATACTACCGAA TGGGGTGGCGCTCTGGTGGCGGCAGTGCTTTGGCGGTATTGTTTCCGCAGACTTTGCTGCAGATTTGGCAAAGCTTAGAG GTCTGTGTGGCAGGCGACTGCATTATCATCATGCAAGCGGCCAAAACAGGTCTGACAGAAGGCTCAGCACCCAACGGCGA GGATTATGATCGACCGGTTATTGTTATTAATACACTGGCCTTAAATCAGCTGTATTTGGTCAATAATAACCAGCAGGTCA TCAGCTTGCCAGGCGCCACATTGCATCAGTTACAAAAGCAGCTCAAGGCGGTCAATAGAGCGCCGCACTCAGTGATAGGA TCATCGACTTTGGGCGCGACTATCGTGGGCGGCGTGTCCAATAATTCAGGTGGCGCTTTGGTAAAAAGAGGACCGGCTTA CACTGAGCTGGCGTTATTTGCTCAAATCAATGAACAAGGTGAGCTGATATTGGTCAATCACTTAAATATCGATCTTGGGG CGTCGCCAGAGCAAATCCTAACCAATCTACAAACCGGTAACTTTGATAAAACCAAGCTGTCAGATAATGGCAAAATGGCT TCGGACAAAGAGTATGTGGCCCGTGTCAAAGATGTCGATGCAGATACGCCAAGCCGATTTAATGCAGACAAAAGAAGACT TTATGAGGCCAGTGGCTGCGCCGGCAAGCTGGCAGTTTTTGCAGTGCGCCTGGACACTTATCCAATAGCTGCCCAAGAAA AAACGTTTTATATCGGCAGCAATAGTATTGGTGAGCTTGCACAGTTAAGACGACAGATACTCTTAGGCTTTACCAATATT CCTGAAGTTGGCGAGTATATGCACCGTGATATCTTCGATGTCTCAACCAAATACGGCAAAGATACTTTTTTAAGTATTAA GCATTTAGGCACTGATACCTTGCCCAGATTGTTCTCCATCAAAGGCGCTATTGATGCGAAGCTGAACAAATGGTCTTGGA TGCCAAAACATTTCACCGATAAAGTGATGCAGTTTATTGCCAATATTTTTCCCAACCATTTGCCCAAGCGAATGACGCAA TATCGCAATAAGTACGAGCATCATCTTATCCTAAAAATGAGCGATGCAGGCATAATAGAGGCTCAGGTATTCTTGGAGAA GTTTTTTGCCGACTCGACAACCGGAGATTATTTTGAGTGCAGCGATGAGGAATCAGAAAGTGCGTTTTTACATCGTTTTG CCGCTGCTGGCGCCGCTTTAAGATATGAGGTGATACATCAAGAGGAGGTCGGCGATATATTGGCACTAGACATCGCCATT CCTCGTAATGAGTTAGCTTGGTTTGAAGCGCTACCAGAAGAGATTAATCAGCATTTGGAGAAGAAGCTGTATTACGGACA TTTCTTTTGTTACGTGTTCCATCAAGACTATATCTTAAAAAAAGGCAGCGATGCTCAGCAGGTCAAGCACTTCATGCTTG AGCTTTTAAACACCAGAGGGGCCAAATATCCTGCTGAGCATAATGTGGGTCACTTATATGAAGCAGAGCCTGATTTGCAA AACTTCTATCAGCGCTTAGATCCCACCAATAGCTTTAACCCTGGCATTGGAAAAATGTCAAAAACCAAGCGCAATTGTTC TTGCTGTTTGTAA
Upstream 100 bases:
>100_bases ATTTTACTCTCGTCAGCTGCGACATTCAGAGACACGATATGCACCGGTGTCATTGTGAGGGCAGTACTTTATATTCTTAA TTATCAAGGGCATTGATGTT
Downstream 100 bases:
>100_bases ATAGCGGCTAAAAATGTCTGATCCATAGGCGGCGTTATTGGACAACAAATGCCAGTTGAATACAACGATACGCTAAATTA TTCACTTGTTTTTTAGACAT
Product: D-lactate dehydrogenase
Products: NA
Alternate protein names: Respiratory D-lactate dehydrogenase [H]
Number of amino acids: Translated: 590; Mature: 589
Protein sequence:
>590_residues MSDIQSAGSTDHIFPSKRVTLGTLTPDQVLQQLTQLLGAANIQADPTKNEYYRMGWRSGGGSALAVLFPQTLLQIWQSLE VCVAGDCIIIMQAAKTGLTEGSAPNGEDYDRPVIVINTLALNQLYLVNNNQQVISLPGATLHQLQKQLKAVNRAPHSVIG SSTLGATIVGGVSNNSGGALVKRGPAYTELALFAQINEQGELILVNHLNIDLGASPEQILTNLQTGNFDKTKLSDNGKMA SDKEYVARVKDVDADTPSRFNADKRRLYEASGCAGKLAVFAVRLDTYPIAAQEKTFYIGSNSIGELAQLRRQILLGFTNI PEVGEYMHRDIFDVSTKYGKDTFLSIKHLGTDTLPRLFSIKGAIDAKLNKWSWMPKHFTDKVMQFIANIFPNHLPKRMTQ YRNKYEHHLILKMSDAGIIEAQVFLEKFFADSTTGDYFECSDEESESAFLHRFAAAGAALRYEVIHQEEVGDILALDIAI PRNELAWFEALPEEINQHLEKKLYYGHFFCYVFHQDYILKKGSDAQQVKHFMLELLNTRGAKYPAEHNVGHLYEAEPDLQ NFYQRLDPTNSFNPGIGKMSKTKRNCSCCL
Sequences:
>Translated_590_residues MSDIQSAGSTDHIFPSKRVTLGTLTPDQVLQQLTQLLGAANIQADPTKNEYYRMGWRSGGGSALAVLFPQTLLQIWQSLE VCVAGDCIIIMQAAKTGLTEGSAPNGEDYDRPVIVINTLALNQLYLVNNNQQVISLPGATLHQLQKQLKAVNRAPHSVIG SSTLGATIVGGVSNNSGGALVKRGPAYTELALFAQINEQGELILVNHLNIDLGASPEQILTNLQTGNFDKTKLSDNGKMA SDKEYVARVKDVDADTPSRFNADKRRLYEASGCAGKLAVFAVRLDTYPIAAQEKTFYIGSNSIGELAQLRRQILLGFTNI PEVGEYMHRDIFDVSTKYGKDTFLSIKHLGTDTLPRLFSIKGAIDAKLNKWSWMPKHFTDKVMQFIANIFPNHLPKRMTQ YRNKYEHHLILKMSDAGIIEAQVFLEKFFADSTTGDYFECSDEESESAFLHRFAAAGAALRYEVIHQEEVGDILALDIAI PRNELAWFEALPEEINQHLEKKLYYGHFFCYVFHQDYILKKGSDAQQVKHFMLELLNTRGAKYPAEHNVGHLYEAEPDLQ NFYQRLDPTNSFNPGIGKMSKTKRNCSCCL >Mature_589_residues SDIQSAGSTDHIFPSKRVTLGTLTPDQVLQQLTQLLGAANIQADPTKNEYYRMGWRSGGGSALAVLFPQTLLQIWQSLEV CVAGDCIIIMQAAKTGLTEGSAPNGEDYDRPVIVINTLALNQLYLVNNNQQVISLPGATLHQLQKQLKAVNRAPHSVIGS STLGATIVGGVSNNSGGALVKRGPAYTELALFAQINEQGELILVNHLNIDLGASPEQILTNLQTGNFDKTKLSDNGKMAS DKEYVARVKDVDADTPSRFNADKRRLYEASGCAGKLAVFAVRLDTYPIAAQEKTFYIGSNSIGELAQLRRQILLGFTNIP EVGEYMHRDIFDVSTKYGKDTFLSIKHLGTDTLPRLFSIKGAIDAKLNKWSWMPKHFTDKVMQFIANIFPNHLPKRMTQY RNKYEHHLILKMSDAGIIEAQVFLEKFFADSTTGDYFECSDEESESAFLHRFAAAGAALRYEVIHQEEVGDILALDIAIP RNELAWFEALPEEINQHLEKKLYYGHFFCYVFHQDYILKKGSDAQQVKHFMLELLNTRGAKYPAEHNVGHLYEAEPDLQN FYQRLDPTNSFNPGIGKMSKTKRNCSCCL
Specific function: First component of the membrane-bound D-lactate oxidase, which is believed to play an important role in the energization of the active transport of a variety of sugars and amino acids [H]
COG id: COG0277
COG function: function code C; FAD/FMN-containing dehydrogenases
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788454, Length=554, Percent_Identity=57.4007220216607, Blast_Score=684, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016172 - InterPro: IPR016173 - InterPro: IPR012256 - InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR016164 - InterPro: IPR016168 - InterPro: IPR015409 - InterPro: IPR006094 [H]
Pfam domain/function: PF01565 FAD_binding_4; PF09330 Lact-deh-memb [H]
EC number: =1.1.1.28 [H]
Molecular weight: Translated: 65794; Mature: 65662
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS00290 IG_MHC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIQSAGSTDHIFPSKRVTLGTLTPDQVLQQLTQLLGAANIQADPTKNEYYRMGWRSGG CCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC GSALAVLFPQTLLQIWQSLEVCVAGDCIIIMQAAKTGLTEGSAPNGEDYDRPVIVINTLA CCEEEHHHHHHHHHHHHHCCCEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEE LNQLYLVNNNQQVISLPGATLHQLQKQLKAVNRAPHSVIGSSTLGATIVGGVSNNSGGAL EEEEEEEECCCEEEECCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCEE VKRGPAYTELALFAQINEQGELILVNHLNIDLGASPEQILTNLQTGNFDKTKLSDNGKMA EECCCCHHHHHHEEEECCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCEECCCCCCC SDKEYVARVKDVDADTPSRFNADKRRLYEASGCAGKLAVFAVRLDTYPIAAQEKTFYIGS CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECC NSIGELAQLRRQILLGFTNIPEVGEYMHRDIFDVSTKYGKDTFLSIKHLGTDTLPRLFSI CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCHHHHHHHH KGAIDAKLNKWSWMPKHFTDKVMQFIANIFPNHLPKRMTQYRNKYEHHLILKMSDAGIIE CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH AQVFLEKFFADSTTGDYFECSDEESESAFLHRFAAAGAALRYEVIHQEEVGDILALDIAI HHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEEC PRNELAWFEALPEEINQHLEKKLYYGHFFCYVFHQDYILKKGSDAQQVKHFMLELLNTRG CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECHHHCCCCCCHHHHHHHHHHHHHHCC AKYPAEHNVGHLYEAEPDLQNFYQRLDPTNSFNPGIGKMSKTKRNCSCCL CCCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCC >Mature Secondary Structure SDIQSAGSTDHIFPSKRVTLGTLTPDQVLQQLTQLLGAANIQADPTKNEYYRMGWRSGG CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCC GSALAVLFPQTLLQIWQSLEVCVAGDCIIIMQAAKTGLTEGSAPNGEDYDRPVIVINTLA CCEEEHHHHHHHHHHHHHCCCEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEE LNQLYLVNNNQQVISLPGATLHQLQKQLKAVNRAPHSVIGSSTLGATIVGGVSNNSGGAL EEEEEEEECCCEEEECCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCEE VKRGPAYTELALFAQINEQGELILVNHLNIDLGASPEQILTNLQTGNFDKTKLSDNGKMA EECCCCHHHHHHEEEECCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCEECCCCCCC SDKEYVARVKDVDADTPSRFNADKRRLYEASGCAGKLAVFAVRLDTYPIAAQEKTFYIGS CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECC NSIGELAQLRRQILLGFTNIPEVGEYMHRDIFDVSTKYGKDTFLSIKHLGTDTLPRLFSI CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCHHHHHHHH KGAIDAKLNKWSWMPKHFTDKVMQFIANIFPNHLPKRMTQYRNKYEHHLILKMSDAGIIE CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH AQVFLEKFFADSTTGDYFECSDEESESAFLHRFAAAGAALRYEVIHQEEVGDILALDIAI HHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEEC PRNELAWFEALPEEINQHLEKKLYYGHFFCYVFHQDYILKKGSDAQQVKHFMLELLNTRG CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECHHHCCCCCCHHHHHHHHHHHHHHCC AKYPAEHNVGHLYEAEPDLQNFYQRLDPTNSFNPGIGKMSKTKRNCSCCL CCCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6386470; 3882663; 9278503; 10944213 [H]