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The map label for this gene is hfq [H]

Identifier: 148652630

GI number: 148652630

Start: 976013

End: 976618

Strand: Direct

Name: hfq [H]

Synonym: PsycPRwf_0821

Alternate gene names: 148652630

Gene position: 976013-976618 (Clockwise)

Preceding gene: 148652629

Following gene: 148652631

Centisome position: 32.76

GC content: 49.34

Gene sequence:

>606_bases
ATGTCAAAAGGACAAACGCTTCAAGATCCATTTTTAAATTCTTTGCGCAAAGATCGCATACCCGTATCTATCTTTTTGGT
AAATGGTATTAAACTACAAGGTCAAATTGAATCTTTTGACCAGTATGTGGTGTTGTTAAAAAACACGGTCAGCCAAATGG
TATATAAGCATGCCATATCAACAGTAGTACCTGCCCGCAATCCACGTAGCAGTGGAGCAACACCTGGCGGCTCTATTCAA
CAACCTGCAGGCTACCCTAGTGCAGGCGGCTTTAGTGCACCGCCAGCTGCAGGGGGATTTGATCGAGGCGCGCCTGGTTT
TGAGCCGGGTGGTTTCGCCAGTAAGCGCAGCGGCTTTAATCGTGGCGGCTTTGCCGATCGCGGTTTTAATCAAGAGCGTG
GCGGCTTTGCCCAAGAGCGTGGTTTTGGGGTAGAGCGCGGCTTTGAAGGTGATCGTGGTTTTGATTCTGATAGAAGCTTT
GGCGCCAGTCGTCCACAACCACAGCGCGGCTTCGATGAGCGTAGCTTTGAAAAGCGTGGCTTTGCAGCGCCTAACCAGGT
CGATAATGATGAAGACTTAGGTGGTGGTTTTGGCAGTGATGATTAA

Upstream 100 bases:

>100_bases
AATAACGAAACGTAATAGCTATTTTGGGATTACAGTATTACCCTAATTACTTATTTGTCATCCATCTATAATAAATTAAA
AAATTCAGGAGACATACCTC

Downstream 100 bases:

>100_bases
CTGTTGATGCTGATTTCAAGAGCAATACTCAACAGCCGCCCATTTAAATCTAACGGCTTTGAGTCAACAATAAAAAAACC
TGCTTTCTGGCAGGTTTTTT

Product: RNA chaperone Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSKGQTLQDPFLNSLRKDRIPVSIFLVNGIKLQGQIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRSSGATPGGSIQ
QPAGYPSAGGFSAPPAAGGFDRGAPGFEPGGFASKRSGFNRGGFADRGFNQERGGFAQERGFGVERGFEGDRGFDSDRSF
GASRPQPQRGFDERSFEKRGFAAPNQVDNDEDLGGGFGSDD

Sequences:

>Translated_201_residues
MSKGQTLQDPFLNSLRKDRIPVSIFLVNGIKLQGQIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRSSGATPGGSIQ
QPAGYPSAGGFSAPPAAGGFDRGAPGFEPGGFASKRSGFNRGGFADRGFNQERGGFAQERGFGVERGFEGDRGFDSDRSF
GASRPQPQRGFDERSFEKRGFAAPNQVDNDEDLGGGFGSDD
>Mature_200_residues
SKGQTLQDPFLNSLRKDRIPVSIFLVNGIKLQGQIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRSSGATPGGSIQQ
PAGYPSAGGFSAPPAAGGFDRGAPGFEPGGFASKRSGFNRGGFADRGFNQERGGFAQERGFGVERGFEGDRGFDSDRSFG
ASRPQPQRGFDERSFEKRGFAAPNQVDNDEDLGGGFGSDD

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=66, Percent_Identity=84.8484848484848, Blast_Score=128, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 21464; Mature: 21333

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGQTLQDPFLNSLRKDRIPVSIFLVNGIKLQGQIESFDQYVVLLKNTVSQMVYKHAIS
CCCCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPARNPRSSGATPGGSIQQPAGYPSAGGFSAPPAAGGFDRGAPGFEPGGFASKRSGFN
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
RGGFADRGFNQERGGFAQERGFGVERGFEGDRGFDSDRSFGASRPQPQRGFDERSFEKRG
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
FAAPNQVDNDEDLGGGFGSDD
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKGQTLQDPFLNSLRKDRIPVSIFLVNGIKLQGQIESFDQYVVLLKNTVSQMVYKHAIS
CCCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPARNPRSSGATPGGSIQQPAGYPSAGGFSAPPAAGGFDRGAPGFEPGGFASKRSGFN
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
RGGFADRGFNQERGGFAQERGFGVERGFEGDRGFDSDRSFGASRPQPQRGFDERSFEKRG
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
FAAPNQVDNDEDLGGGFGSDD
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA