Click here to switch to the map view.

The map label for this gene is yggB [C]

Identifier: 148652219

GI number: 148652219

Start: 498975

End: 499922

Strand: Direct

Name: yggB [C]

Synonym: PsycPRwf_0407

Alternate gene names: 148652219

Gene position: 498975-499922 (Clockwise)

Preceding gene: 148652218

Following gene: 148652223

Centisome position: 16.75

GC content: 48.1

Gene sequence:

>948_bases
ATGCCACAGCTTGATAGTGTCAGCGATAAGATTAACGAATACCAGACCATAGCATCTGCTGCCAATCAAATGGTGAATGA
CTTTATCGTACGGCTGCCTTATTTTATTGTGGCCTTATCGGTGCTGCTGCTGTTTTGGCTGCTGTCGATACTGTTCAAAA
AGCTTGTCACTAAGCTATTATTAAAGACGCACACCCACCGTAACTTGATCAGGGTTTTTCAGCGTATTGGTGGCGCACTC
ATTATCTTCGTGGGAGTGATGGTGGCCATGGTCATTGCCATCCCTGGGTTCACGCCTGCCAAATTGGTCGGTGCGCTGGG
CATTGGTTCGGTGGCCATCGGTTTTGCCTTCAAGGACATCTTCCAAAATCTGTTGTCCGGTATTTTATTGCTGCTGTCTG
AGCCGTTTCGTATCGGAGATCAGATTGTCTCAGGAGACTATGAAGGGACGGTTGAAGACATTAAGGTACGTGCGACCACC
ATTCGCACCTATGATGGGCGACAAGTGGTCATCCCCAATTCTCAGCTGTATACCAGTGCATTAACAGTGAATACGGCGTA
TAAGCGTCGCCGGTTAGAGCTGACGGTCGGCATTAGTTATCAAGATGATATTAATGAGGCGAAAGCTGCGATACTAGAGG
CATTAAAGCAGTCTGAGACCGTCTCTAAGTTGGCTGAGCCTTCGGTGGTGGCGACTGAATTTAGTGGCTCAAGCATTGAC
TTGAAGGTGCGCTGGTATATCGATGATGGGACACAGGCCAATAAGGTGGCCTCTATTCATGAAGTGATTGTACAGACAAA
ATCACATTTGGATGCGGCCGGGGTCAGTATACCTTTTCCGATTCGCACCTTGGATTTTAGTGATGCCTCAGCCCAAGCTT
TAATAGACAACATGGTAAGCGCCCAGCAGGTGTCACAAAGCTGCGCTCATAAAAGCAGCCGGAAGTGA

Upstream 100 bases:

>100_bases
TCACTCAAAATTAACCGACTAATAAAAAACAGTCCTAAAAACTGCCTCAAAAAAGCGTTAGAATTGAAGAAAGCCGCTTA
AATTGCCCAATAGGAGTACT

Downstream 100 bases:

>100_bases
ATTTGAGCGCCGCCCCATACGTTAGACCTAACTTATGGGGCGGCGCTCATTATTTGGTTACAGGCGCTTTTTAGGCACAA
TCTTGCTGCAATAAAAGGGC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MPQLDSVSDKINEYQTIASAANQMVNDFIVRLPYFIVALSVLLLFWLLSILFKKLVTKLLLKTHTHRNLIRVFQRIGGAL
IIFVGVMVAMVIAIPGFTPAKLVGALGIGSVAIGFAFKDIFQNLLSGILLLLSEPFRIGDQIVSGDYEGTVEDIKVRATT
IRTYDGRQVVIPNSQLYTSALTVNTAYKRRRLELTVGISYQDDINEAKAAILEALKQSETVSKLAEPSVVATEFSGSSID
LKVRWYIDDGTQANKVASIHEVIVQTKSHLDAAGVSIPFPIRTLDFSDASAQALIDNMVSAQQVSQSCAHKSSRK

Sequences:

>Translated_315_residues
MPQLDSVSDKINEYQTIASAANQMVNDFIVRLPYFIVALSVLLLFWLLSILFKKLVTKLLLKTHTHRNLIRVFQRIGGAL
IIFVGVMVAMVIAIPGFTPAKLVGALGIGSVAIGFAFKDIFQNLLSGILLLLSEPFRIGDQIVSGDYEGTVEDIKVRATT
IRTYDGRQVVIPNSQLYTSALTVNTAYKRRRLELTVGISYQDDINEAKAAILEALKQSETVSKLAEPSVVATEFSGSSID
LKVRWYIDDGTQANKVASIHEVIVQTKSHLDAAGVSIPFPIRTLDFSDASAQALIDNMVSAQQVSQSCAHKSSRK
>Mature_314_residues
PQLDSVSDKINEYQTIASAANQMVNDFIVRLPYFIVALSVLLLFWLLSILFKKLVTKLLLKTHTHRNLIRVFQRIGGALI
IFVGVMVAMVIAIPGFTPAKLVGALGIGSVAIGFAFKDIFQNLLSGILLLLSEPFRIGDQIVSGDYEGTVEDIKVRATTI
RTYDGRQVVIPNSQLYTSALTVNTAYKRRRLELTVGISYQDDINEAKAAILEALKQSETVSKLAEPSVVATEFSGSSIDL
KVRWYIDDGTQANKVASIHEVIVQTKSHLDAAGVSIPFPIRTLDFSDASAQALIDNMVSAQQVSQSCAHKSSRK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=284, Percent_Identity=26.4084507042254, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1786670, Length=172, Percent_Identity=33.7209302325581, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787591, Length=212, Percent_Identity=30.188679245283, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI2367355, Length=205, Percent_Identity=28.2926829268293, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 34515; Mature: 34383

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQLDSVSDKINEYQTIASAANQMVNDFIVRLPYFIVALSVLLLFWLLSILFKKLVTKLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKTHTHRNLIRVFQRIGGALIIFVGVMVAMVIAIPGFTPAKLVGALGIGSVAIGFAFKDI
HHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FQNLLSGILLLLSEPFRIGDQIVSGDYEGTVEDIKVRATTIRTYDGRQVVIPNSQLYTSA
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCEEEECCCHHHHHH
LTVNTAYKRRRLELTVGISYQDDINEAKAAILEALKQSETVSKLAEPSVVATEFSGSSID
HHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
LKVRWYIDDGTQANKVASIHEVIVQTKSHLDAAGVSIPFPIRTLDFSDASAQALIDNMVS
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
AQQVSQSCAHKSSRK
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
PQLDSVSDKINEYQTIASAANQMVNDFIVRLPYFIVALSVLLLFWLLSILFKKLVTKLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKTHTHRNLIRVFQRIGGALIIFVGVMVAMVIAIPGFTPAKLVGALGIGSVAIGFAFKDI
HHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FQNLLSGILLLLSEPFRIGDQIVSGDYEGTVEDIKVRATTIRTYDGRQVVIPNSQLYTSA
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCEEEECCCHHHHHH
LTVNTAYKRRRLELTVGISYQDDINEAKAAILEALKQSETVSKLAEPSVVATEFSGSSID
HHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
LKVRWYIDDGTQANKVASIHEVIVQTKSHLDAAGVSIPFPIRTLDFSDASAQALIDNMVS
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
AQQVSQSCAHKSSRK
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]