| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is dxs [H]
Identifier: 148652223
GI number: 148652223
Start: 503074
End: 505206
Strand: Direct
Name: dxs [H]
Synonym: PsycPRwf_0411
Alternate gene names: 148652223
Gene position: 503074-505206 (Clockwise)
Preceding gene: 148652219
Following gene: 148652224
Centisome position: 16.89
GC content: 48.9
Gene sequence:
>2133_bases ATGCAGCAATATTCTAACTCCACTACGCCCAAGCCTGCGCCCTCGCAACAAATGGACTCAACCTCTGAAGATAACAGTGT TGATATGGCCATTTCGGATGCTGTGGCAAAAAAGCCGGCAGCCATGCGCCTATTTAGTGCAATTCCTACAACACGTCCTA CGACCCCTTTATTAGATAGTATAGAGTCTCCTGCTGATTTAACACCCTTATCTCAGGCTCAGTTGCTTGTTTTAGCAGAT GAGTTACGTGAATACTTGCTATATTCTGCCGGTCAAAGCGGCGGACATTTTGGTGCAAACTTGGGGGTGATTGAATTAAC CATCGCTTTGCATTACCTATTAGATACCCCAAAAGATAAGCTGGTCTGGGACGTCGGTCATCAGGCCTATGCCCATAAAG TGTTGACTGGTCGTAGAGATCGTTTGGCCACTATTCGCGCCAAGCAAGGTCTGACTGCTTTTCCTGAGCGTCAAGAGTCT GAATATGATACCTTTGGGGTAGGCCATTCTTCTACCTCGATTTCAGCAGGCTTAGGCATGAGCTTAGCGCTGCGTCACCT CAAGTCAGATGCCAAAGTCGCTTGTGTGATTGGTGATGGCGCCATGACCGGTGGTATGGCTTTTGAAGCTTTAAATGATG CAGTACAACAAGACGCTGATTTATTGGTGGTTCTCAACGACAATGACATGTCGATCTCTTGCTCAATTGGGGGCTTTTCG CGCCACTTGGCCATGCTTTGGGAATCAGGCTATCAGGTAGATATTACGGCAGGTGGCAAGCCTAAGCTGACGCATCGTCC TGAGATGCCTTTGGCGGATCGCCGAGCACGTCACAGCGCCATACGCGATATTCCCCAAGTGGCTGATAACTTATTCAAAG CCATTGGTTTTACCTATTTTGGCCCCTTTGATGGTCATGACTTACCTGAATTACTAAGGGTGCTTGAGCGTGCCAAAAAC GTCTCAGGGCCGGTACTGGTCCATGTCTATACCACCAAAGGTAAAGGCTTTATCCCCGCTGAAGGCGATCCGGTAAAATA CCATGCTATTAGCAAATTGCCCGAAAAACTAGAGCCCAAAGCTGCCGACGCTCAAGCCAACTTCGAAAAACAAGCATCTG TCCAAAGCGCCCCAACTCAGCTGACTAAGAAAAAGTACTCTGATGTTTTCGGTGACTTCTTATGCGATAAAGCGGCAGTA GACCCAAAGCTGATTGCCATTACACCGGCTATGGAGTCCGGCTCTGGTATGACGGAGTTTGCACAGCGTTATCCTAAGCA GTTTTTTGATGTGGCGATTGCTGAGCAGCATGCCGTGACTTTGGCAGCGGGTATGGCCACTTTAGACGTTAAGCCTGTGG TCGCGATTTATTCCACTTTTTTGCAGCGTGGTTATGATCAGCTGATTCATGATGTGGCCTTACAAAATCTAGATGTCACT TTTGGTATTGACCGGGCAGGCTTGGTCGGGGAAGATGGAGCGACCCATGCAGGCGTGTTTGATTTGGCTTATATGCGCTG CGTGCCAAACTTAATCGTTGCCACCCCAAAAGATGAACATGAGTGCTACCAATTACTCAACACATGCTATGAGTATCAAG GCCCAAGTGCGGTACGTTACCCTCGTGGTACCGGCCCTGGTGCCACTATTGTTAAACCTGCTCAGTGCTATGAGGTCGGT AAAGGGGTGATTGAGTCGACTCATCATTCAGACTCAAGCGCTCAGCCTGAAGTGAAGATTGCGCTACTGGCCTTTGGACC CATGGTCACTACCGCTGAAGCGGCGGCGCAAAACTTAATCGCTGCCACCGAGCTTGGTGCCATTACTGTGAGCGTGGTAA ATATGCGCTGGGTTAAGCCACTGGACACCCAGCTGTTAGATGAGCTGTTGGCGCAAGGCTATACTCATATGGTAACTTTA GAAGAGCATGCAGTCATGGGCGGCGCCGGCAGTGCGGTTAATGAGTATTTACTCAATCACACCACATGCATTCAGCAAGG CGTGCGTATAAAAAATATTGGTATTGCTGATGAGTTTATCGCGCATGGTAGCCATGAACAACAATTGGCCGAATGTGGCT TAGATGTGGCTGGCGTTACTGCTCACCTGCAGGCGCTACTTGCGGTAAAATAA
Upstream 100 bases:
>100_bases GTACTTTTATATCCCAGCATAAGCAATTTTAATATTGAGTTGAGTTACCTCAATTCGATAGACAGCGTCTATACTAAGAT TAGTAGGTTTTGTAAGGTCT
Downstream 100 bases:
>100_bases GCGGTATGACCTGCTTAAAAATAGGTTTTAACCTCAATCACAAAATATGGGCCACGCTTGGCCCCGCTGTTTTTTCTCCT TCTTAAATCAACACCACTCA
Product: 1-deoxy-D-xylulose-5-phosphate synthase
Products: NA
Alternate protein names: 1-deoxyxylulose-5-phosphate synthase; DXP synthase; DXPS [H]
Number of amino acids: Translated: 710; Mature: 710
Protein sequence:
>710_residues MQQYSNSTTPKPAPSQQMDSTSEDNSVDMAISDAVAKKPAAMRLFSAIPTTRPTTPLLDSIESPADLTPLSQAQLLVLAD ELREYLLYSAGQSGGHFGANLGVIELTIALHYLLDTPKDKLVWDVGHQAYAHKVLTGRRDRLATIRAKQGLTAFPERQES EYDTFGVGHSSTSISAGLGMSLALRHLKSDAKVACVIGDGAMTGGMAFEALNDAVQQDADLLVVLNDNDMSISCSIGGFS RHLAMLWESGYQVDITAGGKPKLTHRPEMPLADRRARHSAIRDIPQVADNLFKAIGFTYFGPFDGHDLPELLRVLERAKN VSGPVLVHVYTTKGKGFIPAEGDPVKYHAISKLPEKLEPKAADAQANFEKQASVQSAPTQLTKKKYSDVFGDFLCDKAAV DPKLIAITPAMESGSGMTEFAQRYPKQFFDVAIAEQHAVTLAAGMATLDVKPVVAIYSTFLQRGYDQLIHDVALQNLDVT FGIDRAGLVGEDGATHAGVFDLAYMRCVPNLIVATPKDEHECYQLLNTCYEYQGPSAVRYPRGTGPGATIVKPAQCYEVG KGVIESTHHSDSSAQPEVKIALLAFGPMVTTAEAAAQNLIAATELGAITVSVVNMRWVKPLDTQLLDELLAQGYTHMVTL EEHAVMGGAGSAVNEYLLNHTTCIQQGVRIKNIGIADEFIAHGSHEQQLAECGLDVAGVTAHLQALLAVK
Sequences:
>Translated_710_residues MQQYSNSTTPKPAPSQQMDSTSEDNSVDMAISDAVAKKPAAMRLFSAIPTTRPTTPLLDSIESPADLTPLSQAQLLVLAD ELREYLLYSAGQSGGHFGANLGVIELTIALHYLLDTPKDKLVWDVGHQAYAHKVLTGRRDRLATIRAKQGLTAFPERQES EYDTFGVGHSSTSISAGLGMSLALRHLKSDAKVACVIGDGAMTGGMAFEALNDAVQQDADLLVVLNDNDMSISCSIGGFS RHLAMLWESGYQVDITAGGKPKLTHRPEMPLADRRARHSAIRDIPQVADNLFKAIGFTYFGPFDGHDLPELLRVLERAKN VSGPVLVHVYTTKGKGFIPAEGDPVKYHAISKLPEKLEPKAADAQANFEKQASVQSAPTQLTKKKYSDVFGDFLCDKAAV DPKLIAITPAMESGSGMTEFAQRYPKQFFDVAIAEQHAVTLAAGMATLDVKPVVAIYSTFLQRGYDQLIHDVALQNLDVT FGIDRAGLVGEDGATHAGVFDLAYMRCVPNLIVATPKDEHECYQLLNTCYEYQGPSAVRYPRGTGPGATIVKPAQCYEVG KGVIESTHHSDSSAQPEVKIALLAFGPMVTTAEAAAQNLIAATELGAITVSVVNMRWVKPLDTQLLDELLAQGYTHMVTL EEHAVMGGAGSAVNEYLLNHTTCIQQGVRIKNIGIADEFIAHGSHEQQLAECGLDVAGVTAHLQALLAVK >Mature_710_residues MQQYSNSTTPKPAPSQQMDSTSEDNSVDMAISDAVAKKPAAMRLFSAIPTTRPTTPLLDSIESPADLTPLSQAQLLVLAD ELREYLLYSAGQSGGHFGANLGVIELTIALHYLLDTPKDKLVWDVGHQAYAHKVLTGRRDRLATIRAKQGLTAFPERQES EYDTFGVGHSSTSISAGLGMSLALRHLKSDAKVACVIGDGAMTGGMAFEALNDAVQQDADLLVVLNDNDMSISCSIGGFS RHLAMLWESGYQVDITAGGKPKLTHRPEMPLADRRARHSAIRDIPQVADNLFKAIGFTYFGPFDGHDLPELLRVLERAKN VSGPVLVHVYTTKGKGFIPAEGDPVKYHAISKLPEKLEPKAADAQANFEKQASVQSAPTQLTKKKYSDVFGDFLCDKAAV DPKLIAITPAMESGSGMTEFAQRYPKQFFDVAIAEQHAVTLAAGMATLDVKPVVAIYSTFLQRGYDQLIHDVALQNLDVT FGIDRAGLVGEDGATHAGVFDLAYMRCVPNLIVATPKDEHECYQLLNTCYEYQGPSAVRYPRGTGPGATIVKPAQCYEVG KGVIESTHHSDSSAQPEVKIALLAFGPMVTTAEAAAQNLIAATELGAITVSVVNMRWVKPLDTQLLDELLAQGYTHMVTL EEHAVMGGAGSAVNEYLLNHTTCIQQGVRIKNIGIADEFIAHGSHEQQLAECGLDVAGVTAHLQALLAVK
Specific function: Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) [H]
COG id: COG1154
COG function: function code HI; Deoxyxylulose-5-phosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family. DXPS subfamily [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=570, Percent_Identity=21.9298245614035, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI4507521, Length=570, Percent_Identity=21.9298245614035, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI225637459, Length=508, Percent_Identity=21.8503937007874, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI225637461, Length=508, Percent_Identity=21.8503937007874, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI225637463, Length=508, Percent_Identity=21.8503937007874, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI133778974, Length=515, Percent_Identity=24.6601941747573, Blast_Score=78, Evalue=3e-14, Organism=Escherichia coli, GI1786622, Length=658, Percent_Identity=47.5683890577508, Blast_Score=590, Evalue=1e-170, Organism=Caenorhabditis elegans, GI17539652, Length=539, Percent_Identity=22.6345083487941, Blast_Score=90, Evalue=5e-18, Organism=Drosophila melanogaster, GI24666278, Length=604, Percent_Identity=24.5033112582781, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI45551847, Length=588, Percent_Identity=23.1292517006803, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI45550715, Length=588, Percent_Identity=23.1292517006803, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI24645119, Length=588, Percent_Identity=23.1292517006803, Blast_Score=85, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001017 - InterPro: IPR005477 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR020826 - InterPro: IPR005476 [H]
Pfam domain/function: PF00676 E1_dh; PF02779 Transket_pyr; PF02780 Transketolase_C [H]
EC number: =2.2.1.7 [H]
Molecular weight: Translated: 76435; Mature: 76435
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQYSNSTTPKPAPSQQMDSTSEDNSVDMAISDAVAKKPAAMRLFSAIPTTRPTTPLLDS CCCCCCCCCCCCCCCHHCCCCCCCCCEEEEHHHHHHCCHHHHHHHHHCCCCCCCCHHHHC IESPADLTPLSQAQLLVLADELREYLLYSAGQSGGHFGANLGVIELTIALHYLLDTPKDK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH LVWDVGHQAYAHKVLTGRRDRLATIRAKQGLTAFPERQESEYDTFGVGHSSTSISAGLGM EEEECCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH SLALRHLKSDAKVACVIGDGAMTGGMAFEALNDAVQQDADLLVVLNDNDMSISCSIGGFS HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCHH RHLAMLWESGYQVDITAGGKPKLTHRPEMPLADRRARHSAIRDIPQVADNLFKAIGFTYF HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE GPFDGHDLPELLRVLERAKNVSGPVLVHVYTTKGKGFIPAEGDPVKYHAISKLPEKLEPK CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCCCCCCEEEHHHHHCHHHHCCC AADAQANFEKQASVQSAPTQLTKKKYSDVFGDFLCDKAAVDPKLIAITPAMESGSGMTEF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH AQRYPKQFFDVAIAEQHAVTLAAGMATLDVKPVVAIYSTFLQRGYDQLIHDVALQNLDVT HHHCCHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE FGIDRAGLVGEDGATHAGVFDLAYMRCVPNLIVATPKDEHECYQLLNTCYEYQGPSAVRY ECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEECC PRGTGPGATIVKPAQCYEVGKGVIESTHHSDSSAQPEVKIALLAFGPMVTTAEAAAQNLI CCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHH AATELGAITVSVVNMRWVKPLDTQLLDELLAQGYTHMVTLEEHAVMGGAGSAVNEYLLNH HHHHHCEEEEEEEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHEECCCCHHHHHHHHHH TTCIQQGVRIKNIGIADEFIAHGSHEQQLAECGLDVAGVTAHLQALLAVK HHHHHCCCEEEECCCHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MQQYSNSTTPKPAPSQQMDSTSEDNSVDMAISDAVAKKPAAMRLFSAIPTTRPTTPLLDS CCCCCCCCCCCCCCCHHCCCCCCCCCEEEEHHHHHHCCHHHHHHHHHCCCCCCCCHHHHC IESPADLTPLSQAQLLVLADELREYLLYSAGQSGGHFGANLGVIELTIALHYLLDTPKDK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH LVWDVGHQAYAHKVLTGRRDRLATIRAKQGLTAFPERQESEYDTFGVGHSSTSISAGLGM EEEECCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH SLALRHLKSDAKVACVIGDGAMTGGMAFEALNDAVQQDADLLVVLNDNDMSISCSIGGFS HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCHH RHLAMLWESGYQVDITAGGKPKLTHRPEMPLADRRARHSAIRDIPQVADNLFKAIGFTYF HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE GPFDGHDLPELLRVLERAKNVSGPVLVHVYTTKGKGFIPAEGDPVKYHAISKLPEKLEPK CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCCCCCCEEEHHHHHCHHHHCCC AADAQANFEKQASVQSAPTQLTKKKYSDVFGDFLCDKAAVDPKLIAITPAMESGSGMTEF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH AQRYPKQFFDVAIAEQHAVTLAAGMATLDVKPVVAIYSTFLQRGYDQLIHDVALQNLDVT HHHCCHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE FGIDRAGLVGEDGATHAGVFDLAYMRCVPNLIVATPKDEHECYQLLNTCYEYQGPSAVRY ECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEECC PRGTGPGATIVKPAQCYEVGKGVIESTHHSDSSAQPEVKIALLAFGPMVTTAEAAAQNLI CCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHH AATELGAITVSVVNMRWVKPLDTQLLDELLAQGYTHMVTLEEHAVMGGAGSAVNEYLLNH HHHHHCEEEEEEEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHEECCCCHHHHHHHHHH TTCIQQGVRIKNIGIADEFIAHGSHEQQLAECGLDVAGVTAHLQALLAVK HHHHHCCCEEEECCCHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA