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The map label for this gene is ydcM [C]

Identifier: 148652179

GI number: 148652179

Start: 439840

End: 440946

Strand: Direct

Name: ydcM [C]

Synonym: PsycPRwf_0367

Alternate gene names: 148652179

Gene position: 439840-440946 (Clockwise)

Preceding gene: 148652178

Following gene: 148652181

Centisome position: 14.76

GC content: 41.64

Gene sequence:

>1107_bases
ATGAAAGCCCTCAAACTACGCATTAAAGACAAGCACATAAAAGAGCTGAATCGGATAAGCGGTTCGGTAAACTTCGTGTG
GAACTATGTCAATGCGCTGTGCTTTGAGCATCTAAAACGTACCGGTAAGTTTTTTAGTGCTTATGATCTAAGTGAGTACA
CCAAAGGAAGCGGTGAGTATTTAGGATTACACAGTCAGACTTTACAAGCTATCAATGAGACTCACGCCAAGGCTCGCAAA
CAGTTTAAAAAAGCCAAACTTAACTGGCGCAGCAATCGTCCTGATGCCAAACGTAAATCCCTTGGGTGGATACCTTTTAA
GAAATCGGCTATTAAATACCTAAGCACAAGACAAACAGGCAAAAAGGCACTTAAATCAACTCTTCAATTATCACTATCCA
AAGGTCAAAAGCTTATTATAGATGTATTCGATAGCTACAACCTCAGTCTATATCAAATAAACACCTTAGAGATAGTACAA
GACAGCCGTAATCGTTGGTATGCGTGTATTACCGTTAAAGACTTTCCTAAGCAATTTAGTGGCAAAGGTAGCGTTGGTAT
TGATTTGGGCTTAACAGAGTCTGCCACTACCTCAAATGGCGACAAGCTAATTATTAAGCAAACGCAAAAGTGGGCGAATA
AATTAGCAGTAGCCCAGCGTGCTAAGAATAAAAAGCATGTCAAAGCAATCCACGCCAAAATCAAAAACACAAGATTAGAC
TTAACTCATAAATTCACCACCAAACTTGTGCAGGGCAATGCTTTGATAGTGGTTGGTAATGTTAAATCACGCTCATTTAC
AACTAAAAAGACCAAACTCGCTAAATCGACATACGATGCAGGTTGGTTTGAACTTAAACGACAACTGGAATACAAATGCA
AGCATGCAGGTTGTCAGCTTGAGATCGTAAATGAGAGTTACACTACCCAGACCTGCTCGTACTGCCGCCAAATAAGTGAC
AGTAGTCCGAAAGGTAGAGCGGGACTTGGAATAAGAGGATGGAGGTGTGCTGAGTGTGGCACATGGCATGATAGAGATAT
CAATGCTGCTAAGAACATCCTTGCGGTCGGGCTTGACCGTCTAGCTGTAGGAATCCCCTCGGTTTAG

Upstream 100 bases:

>100_bases
AAAACCACCCACTTCAGGGGGTGGATATAAGGCGACATGTACTGTCGTGAGCAGTACTTAAAGGGTTGTAAGCTAAGATT
AATCTCGCCATACTAAAGGT

Downstream 100 bases:

>100_bases
CGAGGGGAGGAAGTCAACCCATCACATACTTAGTCACCATGGCTAGACAGACCAGTACAATAACCGGCCGAATCAGCTTG
CTACCGCCTTTGACCACCAT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKALKLRIKDKHIKELNRISGSVNFVWNYVNALCFEHLKRTGKFFSAYDLSEYTKGSGEYLGLHSQTLQAINETHAKARK
QFKKAKLNWRSNRPDAKRKSLGWIPFKKSAIKYLSTRQTGKKALKSTLQLSLSKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPKQFSGKGSVGIDLGLTESATTSNGDKLIIKQTQKWANKLAVAQRAKNKKHVKAIHAKIKNTRLD
LTHKFTTKLVQGNALIVVGNVKSRSFTTKKTKLAKSTYDAGWFELKRQLEYKCKHAGCQLEIVNESYTTQTCSYCRQISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVGIPSV

Sequences:

>Translated_368_residues
MKALKLRIKDKHIKELNRISGSVNFVWNYVNALCFEHLKRTGKFFSAYDLSEYTKGSGEYLGLHSQTLQAINETHAKARK
QFKKAKLNWRSNRPDAKRKSLGWIPFKKSAIKYLSTRQTGKKALKSTLQLSLSKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPKQFSGKGSVGIDLGLTESATTSNGDKLIIKQTQKWANKLAVAQRAKNKKHVKAIHAKIKNTRLD
LTHKFTTKLVQGNALIVVGNVKSRSFTTKKTKLAKSTYDAGWFELKRQLEYKCKHAGCQLEIVNESYTTQTCSYCRQISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVGIPSV
>Mature_368_residues
MKALKLRIKDKHIKELNRISGSVNFVWNYVNALCFEHLKRTGKFFSAYDLSEYTKGSGEYLGLHSQTLQAINETHAKARK
QFKKAKLNWRSNRPDAKRKSLGWIPFKKSAIKYLSTRQTGKKALKSTLQLSLSKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRNRWYACITVKDFPKQFSGKGSVGIDLGLTESATTSNGDKLIIKQTQKWANKLAVAQRAKNKKHVKAIHAKIKNTRLD
LTHKFTTKLVQGNALIVVGNVKSRSFTTKKTKLAKSTYDAGWFELKRQLEYKCKHAGCQLEIVNESYTTQTCSYCRQISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLAVGIPSV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=236, Percent_Identity=31.3559322033898, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41581; Mature: 41581

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALKLRIKDKHIKELNRISGSVNFVWNYVNALCFEHLKRTGKFFSAYDLSEYTKGSGEY
CCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCE
LGLHSQTLQAINETHAKARKQFKKAKLNWRSNRPDAKRKSLGWIPFKKSAIKYLSTRQTG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
KKALKSTLQLSLSKGQKLIIDVFDSYNLSLYQINTLEIVQDSRNRWYACITVKDFPKQFS
HHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECHHEEEECCCCCEEEEEEEECCCHHHC
GKGSVGIDLGLTESATTSNGDKLIIKQTQKWANKLAVAQRAKNKKHVKAIHAKIKNTRLD
CCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEE
LTHKFTTKLVQGNALIVVGNVKSRSFTTKKTKLAKSTYDAGWFELKRQLEYKCKHAGCQL
EHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEE
EIVNESYTTQTCSYCRQISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH
LAVGIPSV
HHHCCCCC
>Mature Secondary Structure
MKALKLRIKDKHIKELNRISGSVNFVWNYVNALCFEHLKRTGKFFSAYDLSEYTKGSGEY
CCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCE
LGLHSQTLQAINETHAKARKQFKKAKLNWRSNRPDAKRKSLGWIPFKKSAIKYLSTRQTG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
KKALKSTLQLSLSKGQKLIIDVFDSYNLSLYQINTLEIVQDSRNRWYACITVKDFPKQFS
HHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECHHEEEECCCCCEEEEEEEECCCHHHC
GKGSVGIDLGLTESATTSNGDKLIIKQTQKWANKLAVAQRAKNKKHVKAIHAKIKNTRLD
CCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEE
LTHKFTTKLVQGNALIVVGNVKSRSFTTKKTKLAKSTYDAGWFELKRQLEYKCKHAGCQL
EHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEE
EIVNESYTTQTCSYCRQISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH
LAVGIPSV
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]