Click here to switch to the map view.

The map label for this gene is 148643435

Identifier: 148643435

GI number: 148643435

Start: 1395166

End: 1395822

Strand: Reverse

Name: 148643435

Synonym: Msm_1375

Alternate gene names: NA

Gene position: 1395822-1395166 (Counterclockwise)

Preceding gene: 148643436

Following gene: 148643434

Centisome position: 75.32

GC content: 30.14

Gene sequence:

>657_bases
ATGGAAACAAAAAACAAAAAACAAAAAATACCGGCAGCAACTGAAGAACATGCTGTTATATTAGATTATCTTAGTTTAGG
TTATGTAAACTCTGATATGTCTAAATTTAAAGGTAAAGCTATTGCTCAAGCTATTGGTACTGACTATTTCACTTTACTAG
AATTAGTTCCTAAAAGAGGAGTTGATTTAGAAATTCAGGACACTGTATATATTGGAAAAGGAAAAAGAGACAAAATATAT
AAAGTTCTTGGAAAATTAGACTATGAAAACTTAACTGCAACCAGCAGAATTGAGTTAGAATATAGTATACGCGAAATAGT
TAAAAACAACGAAGAAAAATTTGTCGAATTCTTCAATACCGCAGGTGCAATTAGTACCCGACTTCACAAATTAGAATTGA
TTCCAGGAATTGGTAAAAAATATATGTGGGAAATTGTTGAAGCTAGAAAAGAAAAACCATTTGAAAGCTTCGAAGATATA
ACTAAAAGAATACCTTCATTAAATAATCCTGCTGAAATGATTGTAAATAGAGTGAAACAAGAACTAGATACAACAACAGC
TAAAAAAGGTAAGAAAAAATATTACCTTTTCACTCCAATTCCAAAAGCTCAAAAGAAACACAGAAATCCAAGAAACAGTA
GGAATCAAAGAAAGTAA

Upstream 100 bases:

>100_bases
TATTAAAACAACTAATATTTCCTTACTGACAATTAATTAGTTAATGTAAGAAAATTCCATCCTCCATGAGGACGGAGTAA
TTCAAACGTGAAGTGATAAA

Downstream 100 bases:

>100_bases
GTGATAACCTTGAATAGTGATGCTGCTTCCACTTCATTATCTAAAACAACAAAAGCTATCCTTAATGAATATGGGATAAA
ATTAAATAAAAATCTCGGAC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
METKNKKQKIPAATEEHAVILDYLSLGYVNSDMSKFKGKAIAQAIGTDYFTLLELVPKRGVDLEIQDTVYIGKGKRDKIY
KVLGKLDYENLTATSRIELEYSIREIVKNNEEKFVEFFNTAGAISTRLHKLELIPGIGKKYMWEIVEARKEKPFESFEDI
TKRIPSLNNPAEMIVNRVKQELDTTTAKKGKKKYYLFTPIPKAQKKHRNPRNSRNQRK

Sequences:

>Translated_218_residues
METKNKKQKIPAATEEHAVILDYLSLGYVNSDMSKFKGKAIAQAIGTDYFTLLELVPKRGVDLEIQDTVYIGKGKRDKIY
KVLGKLDYENLTATSRIELEYSIREIVKNNEEKFVEFFNTAGAISTRLHKLELIPGIGKKYMWEIVEARKEKPFESFEDI
TKRIPSLNNPAEMIVNRVKQELDTTTAKKGKKKYYLFTPIPKAQKKHRNPRNSRNQRK
>Mature_218_residues
METKNKKQKIPAATEEHAVILDYLSLGYVNSDMSKFKGKAIAQAIGTDYFTLLELVPKRGVDLEIQDTVYIGKGKRDKIY
KVLGKLDYENLTATSRIELEYSIREIVKNNEEKFVEFFNTAGAISTRLHKLELIPGIGKKYMWEIVEARKEKPFESFEDI
TKRIPSLNNPAEMIVNRVKQELDTTTAKKGKKKYYLFTPIPKAQKKHRNPRNSRNQRK

Specific function: Unknown

COG id: COG1491

COG function: function code J; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007003
- InterPro:   IPR012340 [H]

Pfam domain/function: PF04919 DUF655 [H]

EC number: NA

Molecular weight: Translated: 25230; Mature: 25230

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKNKKQKIPAATEEHAVILDYLSLGYVNSDMSKFKGKAIAQAIGTDYFTLLELVPKRG
CCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
VDLEIQDTVYIGKGKRDKIYKVLGKLDYENLTATSRIELEYSIREIVKNNEEKFVEFFNT
CCEEEECEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHH
AGAISTRLHKLELIPGIGKKYMWEIVEARKEKPFESFEDITKRIPSLNNPAEMIVNRVKQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
ELDTTTAKKGKKKYYLFTPIPKAQKKHRNPRNSRNQRK
HHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
METKNKKQKIPAATEEHAVILDYLSLGYVNSDMSKFKGKAIAQAIGTDYFTLLELVPKRG
CCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
VDLEIQDTVYIGKGKRDKIYKVLGKLDYENLTATSRIELEYSIREIVKNNEEKFVEFFNT
CCEEEECEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHH
AGAISTRLHKLELIPGIGKKYMWEIVEARKEKPFESFEDITKRIPSLNNPAEMIVNRVKQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
ELDTTTAKKGKKKYYLFTPIPKAQKKHRNPRNSRNQRK
HHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]