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The map label for this gene is 148643096

Identifier: 148643096

GI number: 148643096

Start: 997378

End: 998115

Strand: Reverse

Name: 148643096

Synonym: Msm_1036

Alternate gene names: NA

Gene position: 998115-997378 (Counterclockwise)

Preceding gene: 148643101

Following gene: 148643090

Centisome position: 53.86

GC content: 29.81

Gene sequence:

>738_bases
ATGAAATGGAAAAAAATAGGCAATATTTTAATATTGGATAATAAATTCATTGTACAATCAGATAAACAGTTAAAAGAACT
TTCAGATAAACATAAAGTAAAAACTGTCATGAAAGTTGACCATATTCATGGGACTAAAAGGGAACCTGTTATAAAATTAT
TGTATGGTGAGGATACTGAAACAATCAATAAGGAAAATGGATGTCTTTTTAAATTGGATTTAAAAAAAGTAATGTGGTCA
AAAGGAAATAACAACGAGCGAATAAGAATAGCTAAACTTGTTGAAGATAATGAAACTGTTATTGATATGTTTGCAGGAAT
AGGTTATTTTTCAATTCCGATAGGAGTTCACAGCAATGCAAAACAAGTTTATTCAATTGAAATTAATCCCAATTCATTTC
ATTATTTGAAAGAAAATATTAAATTAAATAAAATAAACAATATTATACCTTTACTTGGGGATTGCATGGACATAACTCCA
GAGTATAGTGCAGATAGAATTATAATGGGTTATGTAAAAACAACGCATCATTATTTAAAGACAGCTATTGACAGCCTGAA
CAAAGGTGGAGTTATTCATTATCATGAAACAGTTCCCGAAAAATTAATGGATACCCGTCCGATAAACAGGATTAAAGAAG
TGGCTGGAGATAGGTCGGTGGAATTTTTAAAATTAAATAAGGTTAAGAAATACTCTCCGGGAGTATTTCATGTGGTGTGT
GATGCTAGGATAAATTAG

Upstream 100 bases:

>100_bases
AAAATCAGAATCAATTAATTAGTATAAACTAACTAATAATACATTATGTATTTACATATATAAAGTTTTCTTTTTAAGAT
ACTTTAATGGAGCTTTGTTA

Downstream 100 bases:

>100_bases
CTATTTTTTCAAGCAGTGTTTCATTTAGCCATTTATCATTAACATATTTTTCATAAACACACATTCTTTCGATTAATTCA
AATCCTGCATCCTGTGTTAG

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKWKKIGNILILDNKFIVQSDKQLKELSDKHKVKTVMKVDHIHGTKREPVIKLLYGEDTETINKENGCLFKLDLKKVMWS
KGNNNERIRIAKLVEDNETVIDMFAGIGYFSIPIGVHSNAKQVYSIEINPNSFHYLKENIKLNKINNIIPLLGDCMDITP
EYSADRIIMGYVKTTHHYLKTAIDSLNKGGVIHYHETVPEKLMDTRPINRIKEVAGDRSVEFLKLNKVKKYSPGVFHVVC
DARIN

Sequences:

>Translated_245_residues
MKWKKIGNILILDNKFIVQSDKQLKELSDKHKVKTVMKVDHIHGTKREPVIKLLYGEDTETINKENGCLFKLDLKKVMWS
KGNNNERIRIAKLVEDNETVIDMFAGIGYFSIPIGVHSNAKQVYSIEINPNSFHYLKENIKLNKINNIIPLLGDCMDITP
EYSADRIIMGYVKTTHHYLKTAIDSLNKGGVIHYHETVPEKLMDTRPINRIKEVAGDRSVEFLKLNKVKKYSPGVFHVVC
DARIN
>Mature_245_residues
MKWKKIGNILILDNKFIVQSDKQLKELSDKHKVKTVMKVDHIHGTKREPVIKLLYGEDTETINKENGCLFKLDLKKVMWS
KGNNNERIRIAKLVEDNETVIDMFAGIGYFSIPIGVHSNAKQVYSIEINPNSFHYLKENIKLNKINNIIPLLGDCMDITP
EYSADRIIMGYVKTTHHYLKTAIDSLNKGGVIHYHETVPEKLMDTRPINRIKEVAGDRSVEFLKLNKVKKYSPGVFHVVC
DARIN

Specific function: Unknown

COG id: COG2520

COG function: function code R; Predicted methyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase trmD family [H]

Homologues:

Organism=Homo sapiens, GI157388919, Length=209, Percent_Identity=30.1435406698565, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI212646412, Length=154, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193207541, Length=96, Percent_Identity=36.4583333333333, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193207537, Length=96, Percent_Identity=36.4583333333333, Blast_Score=64, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI193207539, Length=96, Percent_Identity=36.4583333333333, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6321861, Length=127, Percent_Identity=33.8582677165354, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45551508, Length=147, Percent_Identity=34.6938775510204, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003402 [H]

Pfam domain/function: PF02475 Met_10 [H]

EC number: NA

Molecular weight: Translated: 28159; Mature: 28159

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWKKIGNILILDNKFIVQSDKQLKELSDKHKVKTVMKVDHIHGTKREPVIKLLYGEDTE
CCCHHHCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
TINKENGCLFKLDLKKVMWSKGNNNERIRIAKLVEDNETVIDMFAGIGYFSIPIGVHSNA
CCCCCCCEEEEEEHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCC
KQVYSIEINPNSFHYLKENIKLNKINNIIPLLGDCMDITPEYSADRIIMGYVKTTHHYLK
CEEEEEEECCCCEEEHHHCEEEEHHHCHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHH
TAIDSLNKGGVIHYHETVPEKLMDTRPINRIKEVAGDRSVEFLKLNKVKKYSPGVFHVVC
HHHHCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE
DARIN
ECCCC
>Mature Secondary Structure
MKWKKIGNILILDNKFIVQSDKQLKELSDKHKVKTVMKVDHIHGTKREPVIKLLYGEDTE
CCCHHHCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
TINKENGCLFKLDLKKVMWSKGNNNERIRIAKLVEDNETVIDMFAGIGYFSIPIGVHSNA
CCCCCCCEEEEEEHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCC
KQVYSIEINPNSFHYLKENIKLNKINNIIPLLGDCMDITPEYSADRIIMGYVKTTHHYLK
CEEEEEEECCCCEEEHHHCEEEEHHHCHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHH
TAIDSLNKGGVIHYHETVPEKLMDTRPINRIKEVAGDRSVEFLKLNKVKKYSPGVFHVVC
HHHHCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE
DARIN
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]