Click here to switch to the map view.

The map label for this gene is rpl30e

Identifier: 148642967

GI number: 148642967

Start: 870093

End: 870392

Strand: Reverse

Name: rpl30e

Synonym: Msm_0907

Alternate gene names: 148642967

Gene position: 870392-870093 (Counterclockwise)

Preceding gene: 148642968

Following gene: 148642966

Centisome position: 46.97

GC content: 35.33

Gene sequence:

>300_bases
ATGATGGACGTAGATAGAAGTATCAGGGTAGCTGTCGATACTGGTGATGTGACATTAGGCTCTGAAAAATCAATTCAATC
TTTAAAATTAGGAAAAGGTCAGCTTGTAATTGTTGCTGCAAACACTCCTAAAGATATTGTTGAAGATGTTGAATATTATA
CAAATCTTTCAGATATCCCATCATACACTTACGAAGGTTCAAGTGTAGAATTGGGTTCTGTCTGTGGTAAACCATTTACA
GTTGCTACATTAATCGTTAACGATCCAGGAGATTCTACTATATTAGATGATTTGAGGTAG

Upstream 100 bases:

>100_bases
TAACTGGTATCATCGAAAATATTATTATTGGACAACCAATACCTCTTGGTACCGGTTCAATCGGTGTCAAAATGGCAAAT
AAAAATGAATAGGAGGCTAG

Downstream 100 bases:

>100_bases
ATTCATATGTCTATTAAATTCACTGCAAATGAAATTAGATACATAGCTCTTTTTGAAAACATGACTGGAGCAATGGTTAA
AGATTGTATTATCGATGATG

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MMDVDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFT
VATLIVNDPGDSTILDDLR

Sequences:

>Translated_99_residues
MMDVDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFT
VATLIVNDPGDSTILDDLR
>Mature_99_residues
MMDVDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFT
VATLIVNDPGDSTILDDLR

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family

Homologues:

Organism=Homo sapiens, GI4506631, Length=96, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=38.7096774193548, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321408, Length=96, Percent_Identity=36.4583333333333, Blast_Score=74, Evalue=5e-15,
Organism=Drosophila melanogaster, GI17864264, Length=91, Percent_Identity=38.4615384615385, Blast_Score=81, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24585096, Length=91, Percent_Identity=38.4615384615385, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30E_METS3 (A5ULN4)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001273480.1
- ProteinModelPortal:   A5ULN4
- SMR:   A5ULN4
- STRING:   A5ULN4
- GeneID:   5217319
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0907
- eggNOG:   arNOG12921
- HOGENOM:   HBG553631
- OMA:   KYFRVCT
- ProtClustDB:   PRK01018
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00481
- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038
- PANTHER:   PTHR11449

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 10612; Mature: 10612

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: PS00709 RIBOSOMAL_L30E_1; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDVDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIP
CCCCCCCEEEEEECCCEEECCCCCCCEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
SYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDLR
CCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MMDVDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIP
CCCCCCCEEEEEECCCEEECCCCCCCEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
SYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDLR
CCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA