| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is 148642417
Identifier: 148642417
GI number: 148642417
Start: 340184
End: 341407
Strand: Reverse
Name: 148642417
Synonym: Msm_0357
Alternate gene names: NA
Gene position: 341407-340184 (Counterclockwise)
Preceding gene: 148642418
Following gene: 148642416
Centisome position: 18.42
GC content: 37.01
Gene sequence:
>1224_bases ATGATGTGTATAAATAGTGTAGCTGCTACTTGTAACGTAATGGTTATTACTGATCCTACTGGTAAAGACCCGAATGGAGC TGCTGCAGGAAGTATGTCTTTTGCAGATAATATGTTCCAGTCAACATTTTTAATGTCTAAGGAACATCATTTTGCGGTTC TTTCTGGGGGTACTGGTGGTTCAGACTCAAGATTGGATTCCATTGTAGACGCAGTTGCATCTCTTGAAAACAATGCATCT GCAGCTTCTGCAGCATCAATTGCATCTAAATATAAAGGAGCCCGTCTGGTTGTAGGAGGTCCTGAAATGGGTATTTCAAT TGGAGGTTCTTTTGATGCATATGTTGTTACTGTAGACGGTAATGGTTCTATCACTGTAACTCCTTATTCCTCAACTTCTG GTGGAATAGCTACTTTACAGCCTGGACAAAAAGGAGCTATTATTCACTTAAGGAATTCTGAAGGAAACCCATTATATGGT ACTGCAGCTACTGTTCGTAAAGAAACTGCAATTAACATTGGAAAAATGATTAGGGATGGATATCCAGCAACTACTATTGT TTCTGAAGCTATGGGTGAAGTAGCTAATGATTCTGGTGAAAAATACGGTGGAGGTGCAGTAAATCTTGTATCCGGTTTAT CTACTGGAGACATGTTCACGCCTAAGGATTTAAATGAATCTGGTTATCCGATGAATGAAGTTTATTCAAAATCATGTGAT GATTGCGGATGGTCGGTAGGTTATCCATCATCTGAAAATTATGAAGTCTGTCCAGTTTGTAATGGTGAGTTAACAACAAT TTATGCATATGAAGCGTTGGGAAATGCGATTACGGTAACTTCCGATTCGGTTAGTGTTTCAGTTTATGGAAGTGAAAAAC CAGGACTTGCATCAACGACTAAACAAATTGTAGATGCATCCGTTGCTAAATATGGATATGATGCATCAGCTATTGCAACT TCAATTAACAAAGGTATTAACAATGGTCTTTTAGTTGGAGTTGATCATGTAGAACCGAAAGATATTAATGTTAAAAAAGA CTCTAAAGCAGTTGGAGTATATTATACAGCATTAAATGGAGACAAATCATCTCCATCTTGGGATTTACCTGTTGATGCAA ATTTACTAAATATTTTAGGCAGTATACAAACTGCAATTGGGGTAATTTTAATATTGCTTGTAGTATTTAGAAGTAGATTA TTGAAATCGTTCCAAAATCGGTGA
Upstream 100 bases:
>100_bases AGATTTCTCGTCAGTTGAATTAAAGAATACGACAAATCAGGGTTAATAGAGGGATAGTTTGAAAAAGTGGAATATACCAA TAATTTTATTTATAATATTT
Downstream 100 bases:
>100_bases AATTTTTCACCATTAATTATTTTTTTTAAAACAGTGATACTATGGCATTAATCTTAATAAGAGGAGAAAACAATTCAAAA CTACTAAATGCAATTGCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MMCINSVAATCNVMVITDPTGKDPNGAAAGSMSFADNMFQSTFLMSKEHHFAVLSGGTGGSDSRLDSIVDAVASLENNAS AASAASIASKYKGARLVVGGPEMGISIGGSFDAYVVTVDGNGSITVTPYSSTSGGIATLQPGQKGAIIHLRNSEGNPLYG TAATVRKETAINIGKMIRDGYPATTIVSEAMGEVANDSGEKYGGGAVNLVSGLSTGDMFTPKDLNESGYPMNEVYSKSCD DCGWSVGYPSSENYEVCPVCNGELTTIYAYEALGNAITVTSDSVSVSVYGSEKPGLASTTKQIVDASVAKYGYDASAIAT SINKGINNGLLVGVDHVEPKDINVKKDSKAVGVYYTALNGDKSSPSWDLPVDANLLNILGSIQTAIGVILILLVVFRSRL LKSFQNR
Sequences:
>Translated_407_residues MMCINSVAATCNVMVITDPTGKDPNGAAAGSMSFADNMFQSTFLMSKEHHFAVLSGGTGGSDSRLDSIVDAVASLENNAS AASAASIASKYKGARLVVGGPEMGISIGGSFDAYVVTVDGNGSITVTPYSSTSGGIATLQPGQKGAIIHLRNSEGNPLYG TAATVRKETAINIGKMIRDGYPATTIVSEAMGEVANDSGEKYGGGAVNLVSGLSTGDMFTPKDLNESGYPMNEVYSKSCD DCGWSVGYPSSENYEVCPVCNGELTTIYAYEALGNAITVTSDSVSVSVYGSEKPGLASTTKQIVDASVAKYGYDASAIAT SINKGINNGLLVGVDHVEPKDINVKKDSKAVGVYYTALNGDKSSPSWDLPVDANLLNILGSIQTAIGVILILLVVFRSRL LKSFQNR >Mature_407_residues MMCINSVAATCNVMVITDPTGKDPNGAAAGSMSFADNMFQSTFLMSKEHHFAVLSGGTGGSDSRLDSIVDAVASLENNAS AASAASIASKYKGARLVVGGPEMGISIGGSFDAYVVTVDGNGSITVTPYSSTSGGIATLQPGQKGAIIHLRNSEGNPLYG TAATVRKETAINIGKMIRDGYPATTIVSEAMGEVANDSGEKYGGGAVNLVSGLSTGDMFTPKDLNESGYPMNEVYSKSCD DCGWSVGYPSSENYEVCPVCNGELTTIYAYEALGNAITVTSDSVSVSVYGSEKPGLASTTKQIVDASVAKYGYDASAIAT SINKGINNGLLVGVDHVEPKDINVKKDSKAVGVYYTALNGDKSSPSWDLPVDANLLNILGSIQTAIGVILILLVVFRSRL LKSFQNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42170; Mature: 42170
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMCINSVAATCNVMVITDPTGKDPNGAAAGSMSFADNMFQSTFLMSKEHHFAVLSGGTGG CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC SDSRLDSIVDAVASLENNASAASAASIASKYKGARLVVGGPEMGISIGGSFDAYVVTVDG CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEECCCCEEEEEEECC NGSITVTPYSSTSGGIATLQPGQKGAIIHLRNSEGNPLYGTAATVRKETAINIGKMIRDG CCEEEEEECCCCCCCEEEECCCCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC YPATTIVSEAMGEVANDSGEKYGGGAVNLVSGLSTGDMFTPKDLNESGYPMNEVYSKSCD CCHHHHHHHHHHHHHCCCCCCCCCCCEEHECCCCCCCCCCCCCCCCCCCCHHHHHHCCCC DCGWSVGYPSSENYEVCPVCNGELTTIYAYEALGNAITVTSDSVSVSVYGSEKPGLASTT CCCCCCCCCCCCCEEEEEECCCCEEEEEEEEHHCCEEEEECCCEEEEEECCCCCCCHHHH KQIVDASVAKYGYDASAIATSINKGINNGLLVGVDHVEPKDINVKKDSKAVGVYYTALNG HHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECC DKSSPSWDLPVDANLLNILGSIQTAIGVILILLVVFRSRLLKSFQNR CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMCINSVAATCNVMVITDPTGKDPNGAAAGSMSFADNMFQSTFLMSKEHHFAVLSGGTGG CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC SDSRLDSIVDAVASLENNASAASAASIASKYKGARLVVGGPEMGISIGGSFDAYVVTVDG CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEECCCCEEEEEEECC NGSITVTPYSSTSGGIATLQPGQKGAIIHLRNSEGNPLYGTAATVRKETAINIGKMIRDG CCEEEEEECCCCCCCEEEECCCCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCC YPATTIVSEAMGEVANDSGEKYGGGAVNLVSGLSTGDMFTPKDLNESGYPMNEVYSKSCD CCHHHHHHHHHHHHHCCCCCCCCCCCEEHECCCCCCCCCCCCCCCCCCCCHHHHHHCCCC DCGWSVGYPSSENYEVCPVCNGELTTIYAYEALGNAITVTSDSVSVSVYGSEKPGLASTT CCCCCCCCCCCCCEEEEEECCCCEEEEEEEEHHCCEEEEECCCEEEEEECCCCCCCHHHH KQIVDASVAKYGYDASAIATSINKGINNGLLVGVDHVEPKDINVKKDSKAVGVYYTALNG HHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECC DKSSPSWDLPVDANLLNILGSIQTAIGVILILLVVFRSRLLKSFQNR CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA