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The map label for this gene is rpl40e

Identifier: 148642185

GI number: 148642185

Start: 123446

End: 123592

Strand: Reverse

Name: rpl40e

Synonym: Msm_0125

Alternate gene names: 148642185

Gene position: 123592-123446 (Counterclockwise)

Preceding gene: 148642186

Following gene: 148642184

Centisome position: 6.67

GC content: 35.37

Gene sequence:

>147_bases
ATGGCAAGATTTGAAGAAGCAGAAAACAGAATGTTTAATGTTAAAATCTGTTTAAAATGTAATGCTCGTAACCCTGCTGC
TGCAACCACTTGTAGAAAATGTGGTTACACAGGTTTAAGGTTCAAAGCAAAAGAACCAAGAGGATAA

Upstream 100 bases:

>100_bases
ATTTATTAATAGTTATGATAATTAAAATTCTTATTTTGTTTCATAACATATTTTCTTTAATTAAAATTACGTTTTTCATG
ATTATAAGGAGGAGTTATCA

Downstream 100 bases:

>100_bases
TCTTATTCTCTTTACTTCAATTTCTTTTTTTATAAAATTTATTTCAGTACTTTTTAATAAGCTATTTTATTATTTTAATT
TGATTTTTAATCTGTTTTCA

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 48; Mature: 47

Protein sequence:

>48_residues
MARFEEAENRMFNVKICLKCNARNPAAATTCRKCGYTGLRFKAKEPRG

Sequences:

>Translated_48_residues
MARFEEAENRMFNVKICLKCNARNPAAATTCRKCGYTGLRFKAKEPRG
>Mature_47_residues
ARFEEAENRMFNVKICLKCNARNPAAATTCRKCGYTGLRFKAKEPRG

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL40_METS3 (A5UJF2)

Other databases:

- EMBL:   CP000678
- RefSeq:   YP_001272698.1
- ProteinModelPortal:   A5UJF2
- SMR:   A5UJF2
- STRING:   A5UJF2
- GeneID:   5216791
- GenomeReviews:   CP000678_GR
- KEGG:   msi:Msm_0125
- eggNOG:   arNOG14274
- HOGENOM:   HBG391745
- ProtClustDB:   PRK04136
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00788
- InterPro:   IPR001975

Pfam domain/function: PF01020 Ribosomal_L40e

EC number: NA

Molecular weight: Translated: 5453; Mature: 5322

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
12.5 %Cys+Met (Translated Protein)
8.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARFEEAENRMFNVKICLKCNARNPAAATTCRKCGYTGLRFKAKEPRG
CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHCCCCCCEEECCCCCC
>Mature Secondary Structure 
ARFEEAENRMFNVKICLKCNARNPAAATTCRKCGYTGLRFKAKEPRG
CCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA