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The map label for this gene is ybbK [C]

Identifier: 148361298

GI number: 148361298

Start: 3522225

End: 3522980

Strand: Reverse

Name: ybbK [C]

Synonym: LPC_3272

Alternate gene names: 148361298

Gene position: 3522980-3522225 (Counterclockwise)

Preceding gene: 148361299

Following gene: 148361297

Centisome position: 98.5

GC content: 42.59

Gene sequence:

>756_bases
ATGGGACCATTTCTGGTTATATTACTGGTAGCGATAGGTTTGCTACTGGTTTCAATGTTCAAGGTATTTCGGGAATATGA
ACGTGGAGTGGTTTTTATGCTGGGTCGGTTTTGGCGCGTTAAAGGTCCGGGATTGATAATCATTATCCCAGTTATTCAAC
AAGTGGTGCGTGTTGATTTGCGAACCATAGTCATGGATGTACCCAGTCAAGATGTTATCTCGAGAGATAACGTTTCAGTG
CGAGTCAATGCTGTGGTGTATTTTCGTGTTGTCGTTCCTGAAAACGCAATCATCCAGGTTGAAAATTATTTTGAGGCAAC
CAGCCAATTGGCGCAAACCACATTGCGGTCAGTATTGGGTCAGCATGATTTGGATGATATGTTGGCTGAACGCGAGCAAC
TGAATAGTGATGTGCAAAAAATTCTTGATGCCCAGACAGAGAGCTGGGGAATCAAGGTTTCAAATGTTGAAATCAAGAAG
GTGGATTTGGATGAAAGTATGATAAGGGCAATAGCCAAACAGGCTGAAGCGGAAAGAGACAGGAGAGCGAAAGTAATCCA
TGCGGAGGGAGAGTTGCAAGCTTCGGAAAAATTATTGCAAGCCTCTCAAGTGCTCGCTCAGCAACCCCAGGCAATGCAGC
TAAGATATTTGCAAACTTTAGCCACTATAGCGGTTAATAACAATTCAACGATAATTTTCCCTATGCCAATGGAGATAGGT
GATATATTAACTTCCATGGTTGGTAAGAAAAAATAG

Upstream 100 bases:

>100_bases
GTCACGCGAGCATCAGGATTATTGTTGGAAGTGGAGGAAGATCAGTCGGTTTATTAGTTGGTTATTCCATGTTGAATGAA
AAAGGATTAAGGAGAATGAG

Downstream 100 bases:

>100_bases
ACCTTGAACAGTGGCATAAGCCCCAAATATACCTAAGTGTATAGAGTGCTGTCATTGGATATGAGAACATAGCGATAAGA
TTTTTTATTCCGCGTCAGCT

Product: stomatin like transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MGPFLVILLVAIGLLLVSMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPVIQQVVRVDLRTIVMDVPSQDVISRDNVSV
RVNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIKVSNVEIKK
VDLDESMIRAIAKQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTIIFPMPMEIG
DILTSMVGKKK

Sequences:

>Translated_251_residues
MGPFLVILLVAIGLLLVSMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPVIQQVVRVDLRTIVMDVPSQDVISRDNVSV
RVNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIKVSNVEIKK
VDLDESMIRAIAKQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTIIFPMPMEIG
DILTSMVGKKK
>Mature_250_residues
GPFLVILLVAIGLLLVSMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPVIQQVVRVDLRTIVMDVPSQDVISRDNVSVR
VNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIKVSNVEIKKV
DLDESMIRAIAKQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTIIFPMPMEIGD
ILTSMVGKKK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=238, Percent_Identity=48.3193277310924, Blast_Score=211, Evalue=5e-55,
Organism=Homo sapiens, GI21686995, Length=238, Percent_Identity=48.3193277310924, Blast_Score=211, Evalue=7e-55,
Organism=Homo sapiens, GI38016911, Length=260, Percent_Identity=45.3846153846154, Blast_Score=202, Evalue=2e-52,
Organism=Homo sapiens, GI7657615, Length=252, Percent_Identity=35.3174603174603, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI7305503, Length=185, Percent_Identity=36.2162162162162, Blast_Score=121, Evalue=8e-28,
Organism=Homo sapiens, GI20149563, Length=157, Percent_Identity=31.2101910828025, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI38016907, Length=67, Percent_Identity=55.2238805970149, Blast_Score=75, Evalue=4e-14,
Organism=Escherichia coli, GI1786697, Length=192, Percent_Identity=34.375, Blast_Score=122, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17569493, Length=240, Percent_Identity=47.5, Blast_Score=214, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI193209764, Length=240, Percent_Identity=47.5, Blast_Score=214, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI17569497, Length=243, Percent_Identity=43.2098765432099, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=238, Percent_Identity=46.218487394958, Blast_Score=192, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI71987621, Length=221, Percent_Identity=48.868778280543, Blast_Score=192, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI71987612, Length=238, Percent_Identity=46.218487394958, Blast_Score=192, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17570161, Length=236, Percent_Identity=44.9152542372881, Blast_Score=187, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=236, Percent_Identity=44.9152542372881, Blast_Score=187, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17570459, Length=237, Percent_Identity=44.3037974683544, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17569499, Length=236, Percent_Identity=46.6101694915254, Blast_Score=187, Evalue=5e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=228, Percent_Identity=45.6140350877193, Blast_Score=180, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=231, Percent_Identity=47.1861471861472, Blast_Score=179, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=46.195652173913, Blast_Score=140, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI32564147, Length=168, Percent_Identity=35.7142857142857, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=47.4576271186441, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17542664, Length=160, Percent_Identity=25, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45556022, Length=237, Percent_Identity=48.1012658227848, Blast_Score=215, Evalue=2e-56,
Organism=Drosophila melanogaster, GI18860517, Length=246, Percent_Identity=47.5609756097561, Blast_Score=208, Evalue=3e-54,
Organism=Drosophila melanogaster, GI24657857, Length=246, Percent_Identity=48.3739837398374, Blast_Score=201, Evalue=3e-52,
Organism=Drosophila melanogaster, GI62484448, Length=246, Percent_Identity=48.3739837398374, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI62484274, Length=246, Percent_Identity=48.3739837398374, Blast_Score=200, Evalue=6e-52,
Organism=Drosophila melanogaster, GI281365664, Length=246, Percent_Identity=48.3739837398374, Blast_Score=200, Evalue=7e-52,
Organism=Drosophila melanogaster, GI281361631, Length=237, Percent_Identity=40.084388185654, Blast_Score=185, Evalue=2e-47,
Organism=Drosophila melanogaster, GI281361633, Length=237, Percent_Identity=40.084388185654, Blast_Score=185, Evalue=2e-47,
Organism=Drosophila melanogaster, GI28573263, Length=238, Percent_Identity=39.0756302521008, Blast_Score=184, Evalue=7e-47,
Organism=Drosophila melanogaster, GI21356845, Length=234, Percent_Identity=37.6068376068376, Blast_Score=183, Evalue=8e-47,
Organism=Drosophila melanogaster, GI281361635, Length=180, Percent_Identity=41.6666666666667, Blast_Score=147, Evalue=6e-36,
Organism=Drosophila melanogaster, GI45550506, Length=165, Percent_Identity=39.3939393939394, Blast_Score=120, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28243; Mature: 28111

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPFLVILLVAIGLLLVSMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPVIQQVVRVDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHEECCCCEEEEHHHHHHHHHHHH
RTIVMDVPSQDVISRDNVSVRVNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLG
HHHHHCCCCCHHHCCCCCEEEEEEEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHC
QHDLDDMLAEREQLNSDVQKILDAQTESWGIKVSNVEIKKVDLDESMIRAIAKQAEAERD
CCCHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEECEEEEEECCCHHHHHHHHHHHHHHHH
RRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTIIFPMPMEIG
HHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCEEEEECCHHHH
DILTSMVGKKK
HHHHHHHCCCC
>Mature Secondary Structure 
GPFLVILLVAIGLLLVSMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPVIQQVVRVDL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHEECCCCEEEEHHHHHHHHHHHH
RTIVMDVPSQDVISRDNVSVRVNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLG
HHHHHCCCCCHHHCCCCCEEEEEEEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHC
QHDLDDMLAEREQLNSDVQKILDAQTESWGIKVSNVEIKKVDLDESMIRAIAKQAEAERD
CCCHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEECEEEEEECCCHHHHHHHHHHHHHHHH
RRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTIIFPMPMEIG
HHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCEEEEECCHHHH
DILTSMVGKKK
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]