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The map label for this gene is cph2 [H]

Identifier: 148360473

GI number: 148360473

Start: 1060040

End: 1061173

Strand: Direct

Name: cph2 [H]

Synonym: LPC_2413

Alternate gene names: 148360473

Gene position: 1060040-1061173 (Clockwise)

Preceding gene: 148360480

Following gene: 148360471

Centisome position: 29.64

GC content: 33.95

Gene sequence:

>1134_bases
ATGACTTCCTCCAAGCATTACAAGGAAAGTTTGGCTTTGCTATTTGAGGGATCTCTAAGAGCGATTCCGTTCAATATTAT
ATTGGCCATATTGCTTGCTCTTGACCTTGTTTATAGTGATGTGCCTGCATTAATAATCGGGGCATGGTTTTTGGGTATTG
TCTTCATAAGCTCGGTAAGAAGTCTTTTCTGCTGGAAAATAATTAAGCGGGGAGTAGAAAAAAATAGAATACAAGCCACA
TTGATCGAGTTTTCCCTTCTTACATTTGTCACGGGTGGTATTTGGGGTGCGTGTTACTTCATTACACTGCCTTATTTAAA
TGATCTGCATGAATTTATTATTATTTTGGTACTTGGCGGAATGTGCGCAGGCGCGATTGCTTCTCTCTCTATTTATTTGC
CAGTTTATTATGCTTATGTTTTTCCAATGCTTTTGCCAGTCATTATTTATAATTATGCCTTGTTAGATGTCGATAGAACG
ATTTTAGCAACCATGTTTCTAGTATTTATTGCCGTGCTTATTATTTCTGCAAAGATTAATCATAGATTACTCACTGAAAA
TTTTCGATTGTTCAATGAAAAAGAACTATTAATCAATGAATTGAAAGTGATGTCAATCACTGATTCTTTGTCGGGGTTAT
ATAACAGGCGATATTTTGACAACATATTTCCACAAGAGTTTAACCGAGCAAGACGCAATCAATATTTTTTAAGCCTGGTT
TCAATAGATATAGATAATTTTAAATTAATCAATGATAATTTGGGGCATCCTTTTGGCGATAAAGTCCTGATTAGCATCGC
TGATTTATTGAAAAAAATATTTCGACGTTCAAACGATATATTGTTTCGGCTTGGCGGAGACGAATTTGCAATAATCATCG
CTAACCAGCCGATTAAAGAAACAATATCTCTTTGCCAAATAATTAAAAATCCTTTTAAAACAGAAAATTTGAACCATACT
TATGATTCAAACGAGAAATTACTCATGAGTCATGTCACTTTAAGCATAGGAATTGCTTATATTCATTTTGAAAGTTCAGT
CAGTATAGAGCGTGCAATTACTGCAGCGGATAAGGCATTATATCAAGCTAAAAGAAAAGGAAAAAACCAAATTGTAGTAA
AAAAACTACTTTAA

Upstream 100 bases:

>100_bases
GATAAAAGAATCTATATGTTTTAAAAATGTCAGTGTTCTATAATTAACCAGTGTTCTATAATTAAAAGGGGTGAATATTA
ATTAATGGACATTCGATAAG

Downstream 100 bases:

>100_bases
GAAGATGATATTCTATCTTTAACAGAGATGGCAGCCTGGAAGCTGCGTCGTACCTTAATGGATTATAAGTTGACAGTAAA
TCCTAATAAAATTCCATGTA

Product: two component response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTSSKHYKESLALLFEGSLRAIPFNIILAILLALDLVYSDVPALIIGAWFLGIVFISSVRSLFCWKIIKRGVEKNRIQAT
LIEFSLLTFVTGGIWGACYFITLPYLNDLHEFIIILVLGGMCAGAIASLSIYLPVYYAYVFPMLLPVIIYNYALLDVDRT
ILATMFLVFIAVLIISAKINHRLLTENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISLCQIIKNPFKTENLNHT
YDSNEKLLMSHVTLSIGIAYIHFESSVSIERAITAADKALYQAKRKGKNQIVVKKLL

Sequences:

>Translated_377_residues
MTSSKHYKESLALLFEGSLRAIPFNIILAILLALDLVYSDVPALIIGAWFLGIVFISSVRSLFCWKIIKRGVEKNRIQAT
LIEFSLLTFVTGGIWGACYFITLPYLNDLHEFIIILVLGGMCAGAIASLSIYLPVYYAYVFPMLLPVIIYNYALLDVDRT
ILATMFLVFIAVLIISAKINHRLLTENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISLCQIIKNPFKTENLNHT
YDSNEKLLMSHVTLSIGIAYIHFESSVSIERAITAADKALYQAKRKGKNQIVVKKLL
>Mature_376_residues
TSSKHYKESLALLFEGSLRAIPFNIILAILLALDLVYSDVPALIIGAWFLGIVFISSVRSLFCWKIIKRGVEKNRIQATL
IEFSLLTFVTGGIWGACYFITLPYLNDLHEFIIILVLGGMCAGAIASLSIYLPVYYAYVFPMLLPVIIYNYALLDVDRTI
LATMFLVFIAVLIISAKINHRLLTENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVS
IDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISLCQIIKNPFKTENLNHTY
DSNEKLLMSHVTLSIGIAYIHFESSVSIERAITAADKALYQAKRKGKNQIVVKKLL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=34.8571428571429, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=32.7485380116959, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=37.5, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=32.967032967033, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788085, Length=203, Percent_Identity=30.5418719211823, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=34.020618556701, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=31.25, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082007, Length=221, Percent_Identity=26.2443438914027, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=29.9465240641711, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=33.7142857142857, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787056, Length=170, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=29.6969696969697, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=24.5714285714286, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 42923; Mature: 42792

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSKHYKESLALLFEGSLRAIPFNIILAILLALDLVYSDVPALIIGAWFLGIVFISSVR
CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
SLFCWKIIKRGVEKNRIQATLIEFSLLTFVTGGIWGACYFITLPYLNDLHEFIIILVLGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MCAGAIASLSIYLPVYYAYVFPMLLPVIIYNYALLDVDRTILATMFLVFIAVLIISAKIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HRLLTENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEE
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKE
EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHH
TISLCQIIKNPFKTENLNHTYDSNEKLLMSHVTLSIGIAYIHFESSVSIERAITAADKAL
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHH
YQAKRKGKNQIVVKKLL
HHHHHCCCCCEEHEECC
>Mature Secondary Structure 
TSSKHYKESLALLFEGSLRAIPFNIILAILLALDLVYSDVPALIIGAWFLGIVFISSVR
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
SLFCWKIIKRGVEKNRIQATLIEFSLLTFVTGGIWGACYFITLPYLNDLHEFIIILVLGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MCAGAIASLSIYLPVYYAYVFPMLLPVIIYNYALLDVDRTILATMFLVFIAVLIISAKIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HRLLTENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEE
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKE
EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHH
TISLCQIIKNPFKTENLNHTYDSNEKLLMSHVTLSIGIAYIHFESSVSIERAITAADKAL
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHH
YQAKRKGKNQIVVKKLL
HHHHHCCCCCEEHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]