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The map label for this gene is 148358415

Identifier: 148358415

GI number: 148358415

Start: 293040

End: 294542

Strand: Direct

Name: 148358415

Synonym: LPC_0281

Alternate gene names: NA

Gene position: 293040-294542 (Clockwise)

Preceding gene: 148358414

Following gene: 148358417

Centisome position: 8.19

GC content: 40.59

Gene sequence:

>1503_bases
ATGACGACACTGTGTTTTATATTAGGCGATCAACTCAATGAAACAATCGCTTCACTTGCGGCAATTAATAAACAGAAGGA
CATTGTATTTTTATGTGAAGTGGCAGAAGAAACTTCTTATGTCCCTCATCATCCGAAAAAAATCGCGTTCTTATTTTCGG
CAATGCGTCATTTTGCGCAACAATTGAAAAAGAAAGGTTATCGAGTCCGCTATACGGCATTCGATGATCCTCGCAATCAA
GGCAGTTTTGCCAAAGAATTGCTTCGTGCCATTGAAGAGGAGCAGGTGTCAGCAATAAGCCTTACCGAACCTGGAGAGTG
GCGTGTTCTGAAAATATTCCATGATTTAAAAAGCCAATTGACTATTCCTGTCACTCTACATGAAGACAATCGGTTTTTAT
GCAAAATTAATGAGTTCAGAAATTGGGCTAAGGAAAAAAAACAGCTACGGATGGAGTTTTTTTACCGGATGATGCGCCAA
AAATATCATCTTCTGGTCGATAATGATGGGAAACCAGTTGGCGGCTCATGGAATTATGATGCCCAAAATCGTAAAAATGC
CAATCGCATCAGTTCATTCCCCAAGCGTTTAGAGCATGCCAGGGATGTGATAACTGATGAGGTTTTGGGCTTGGTTTCAG
CGCATTTTGCCAAGCACTTTGGTCAGTGCTATCCCTTTAATTTGGCAGTGACCCGCGAGCAAGCATTAGAAGAAGCCGAT
TATTTTATGGAACATTTTCTTTGCAATTTTGGTGCGTATCAGGATGCCATGCTCAAAGATGAAATCAGCTTATATCATTC
AAAACTGTCGTCTTATCTAAATGCTGGGCTTTTATTGCCTCTGGAATTGTGTCAAATGGCAGAGCAAGCCTATTTCTCAA
AGCAAATGCCTCTTAACTCGGTAGAAGGATTCATACGCCAAATTTTAGGATGGCGAGAATATGTGAGGGGTATTTATTGG
CTTTTTATGCCGGATTACGGCGAGATGAACTATTTTAATGCATGCAGACCGTTGCCTTCCTTTTTTTGGGGAGAGGAAAC
GGGAATGTTTTGTATTAAGGAAGTGGTACGTCAGACCTCGAATGAAGCCTATTCCCACCATATTCAGCGGTTGATGATAA
CAGGTAATTTTGCCTTGCTTGCAGGTTTAGATCCCAAACAAGTTTGTGAGTGGTATCTTGCTGTCTATGCTGATGCGTAT
GAATGGGTAGAGTTACCCAATACATTGGGTATGGCTCTTTATGCAGATGGGGGGCTGATGGCCAGTAAACCGTATGCCGC
CAGTGGGAAATACATTCACCGCATGAGTAATTTTTGCCAATCCTGCTATTATAATCCCAATGATCTTTTGGGTGAAAAGG
CATGTCCTTTTAATGCGCTCTATTGGAATTTTCTTCACCAAAATCAAGAAAAATTAAAAGATAACCCTCGCCTTCATTAT
GCCTATATGAATTGGCAAAAAATGGATTTTGATAAACAAAAGAAAACTATCCATAAAGCATAA

Upstream 100 bases:

>100_bases
AATCCGGACAACAGTTGGATCACAGGGCAAGTGATTGCTGTTGATGGCGGGTTAAGCCGAGTTCGGCCCAAGATGAAAAT
TTAATGAAACTATAATTTTT

Downstream 100 bases:

>100_bases
CGAATACTGGCAGACTTGGATCCTGCCAATCTCTGATGTCTTATTTGATATAACCTGCCACATAGATAGTCGCTATCGAA
CTCCAGGAGCACAGTACTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribodipyrimidine Photolyase-Like Protein; Photolyase; Deoxyribodipyrimidine Photolyase Family Protein; Deoxyribodipyrimidine Photolyase; Photolyase Protein Family Protein; Photolyase Family Protein; Deoxyribodipyrimidine Photolyase-Like Protein Protein; Cryptochrome/Photolyase; DNA Photolyase; Bcct Transporter; Photolyase Related Protein; BCCT Transporter; Alpha-Deoxyribodipyrimidine Photolyase-Related Protein; Protein Related Deoxyribodipyrimidine Photolyase; Deoxyribodipyrimidine Photolyase Related Protein; Deoxyribodipyrimidine Photo-Lyase; A Deoxyribodipyrimidine Photolyase-Like Protein; Cryptochrome/Photolyase-Related; Deoxyribodipyrimidine Photolyase Homolog

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MTTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVPHHPKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDDPRNQ
GSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQ
KYHLLVDNDGKPVGGSWNYDAQNRKNANRISSFPKRLEHARDVITDEVLGLVSAHFAKHFGQCYPFNLAVTREQALEEAD
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSSYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVRGIYW
LFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTSNEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAY
EWVELPNTLGMALYADGGLMASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLHY
AYMNWQKMDFDKQKKTIHKA

Sequences:

>Translated_500_residues
MTTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVPHHPKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDDPRNQ
GSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQ
KYHLLVDNDGKPVGGSWNYDAQNRKNANRISSFPKRLEHARDVITDEVLGLVSAHFAKHFGQCYPFNLAVTREQALEEAD
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSSYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVRGIYW
LFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTSNEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAY
EWVELPNTLGMALYADGGLMASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLHY
AYMNWQKMDFDKQKKTIHKA
>Mature_499_residues
TTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVPHHPKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDDPRNQG
SFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQK
YHLLVDNDGKPVGGSWNYDAQNRKNANRISSFPKRLEHARDVITDEVLGLVSAHFAKHFGQCYPFNLAVTREQALEEADY
FMEHFLCNFGAYQDAMLKDEISLYHSKLSSYLNAGLLLPLELCQMAEQAYFSKQMPLNSVEGFIRQILGWREYVRGIYWL
FMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTSNEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYE
WVELPNTLGMALYADGGLMASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLHYA
YMNWQKMDFDKQKKTIHKA

Specific function: Unknown

COG id: COG3046

COG function: function code R; Uncharacterized protein related to deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58477; Mature: 58346

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVPHHPKKIAFLFSAMRHFAQ
CCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHH
QLKKKGYRVRYTAFDDPRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQL
HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHCE
TIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYD
EEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCC
AQNRKNANRISSFPKRLEHARDVITDEVLGLVSAHFAKHFGQCYPFNLAVTREQALEEAD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSSYLNAGLLLPLELCQMAEQAYFSKQMPLNS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHH
VEGFIRQILGWREYVRGIYWLFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTS
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCCCHHHCCCCCCHHHHHHHHHHHC
NEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLM
CHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCE
ASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLHY
ECCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEE
AYMNWQKMDFDKQKKTIHKA
EEECCHHCCCCHHHHHHCCC
>Mature Secondary Structure 
TTLCFILGDQLNETIASLAAINKQKDIVFLCEVAEETSYVPHHPKKIAFLFSAMRHFAQ
CEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHH
QLKKKGYRVRYTAFDDPRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQL
HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHCE
TIPVTLHEDNRFLCKINEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYD
EEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCC
AQNRKNANRISSFPKRLEHARDVITDEVLGLVSAHFAKHFGQCYPFNLAVTREQALEEAD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
YFMEHFLCNFGAYQDAMLKDEISLYHSKLSSYLNAGLLLPLELCQMAEQAYFSKQMPLNS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHH
VEGFIRQILGWREYVRGIYWLFMPDYGEMNYFNACRPLPSFFWGEETGMFCIKEVVRQTS
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCCCHHHCCCCCCHHHHHHHHHHHC
NEAYSHHIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLM
CHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCE
ASKPYAASGKYIHRMSNFCQSCYYNPNDLLGEKACPFNALYWNFLHQNQEKLKDNPRLHY
ECCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCHHHHCCCCCEEE
AYMNWQKMDFDKQKKTIHKA
EEECCHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA