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The map label for this gene is ychF [H]

Identifier: 148284983

GI number: 148284983

Start: 1744129

End: 1745229

Strand: Direct

Name: ychF [H]

Synonym: OTBS_1804

Alternate gene names: 148284983

Gene position: 1744129-1745229 (Clockwise)

Preceding gene: 148284982

Following gene: 148284985

Centisome position: 82.0

GC content: 33.79

Gene sequence:

>1101_bases
ATGGAACTTAGATATGGAATAGTTGGATTGCCTAACGTAGGAAAATCAACCTTATTTAATGCTTTAACTGCTACTCAAGC
TGCTAATGTTGGAAATTATTCATTTTGTACAATTGAGTCTAATATTGGTATTGCAGCTGTTCCAGATCCCAGGCTGCCAA
AATTAGCTGATATTGCTGGTTCGCAAAGCATTATTCCAACCTATGTTAAATTTGTTGATATTGCGGGCTTAGTAAAAGGT
GCTAGCTCTGGAGAAGGACTAGGTAATAAATTTTTGTCTCACATTAGGGATGTAGATGCAATTATTCATGTTTTAAGATG
TTTTGATATTTCAGATATTACTCATATATATAGTAGTATTGATCCAGTTCGTGATGCTGAGATAATAGAGCTAGAGCTTA
TTTTAGCAGATCTTGAGTCTATAGAGAAAAGATTGCCTGCCTTGGGAAAAAAATCTAGGGGTGGCGATCAAAAAGCTAAA
GAAGAAATAGAACTGTTATATCATGCACAACAAATTTTGCGTAATGGTCAGCCAGTAAAAAATCTGCAATTATATCGCGA
AAAAAGGCACAAATTTGATCGGTTGCATTTGCTTACTACTAAGCCAGTAATATATGTTTGTAATGTGCTAGAACATGAAG
CAGTATCTGGTAACGCTTTGTGTAAAGCTGTGCAAGAAAGCGATATATTAGGTCAATCAGATATGATTATTATTTCATCA
AGTATTGAATCTGAAATTGCTATTTTAAGCACTTTAGAAGAAAAAAAAGATTATCTGAATATTTTGGGACTGCAAGAAAC
TGGGTTGAACAAGATCATTAAATCTTGCTATAGGCTATTTGATTTAAATAGTTATTTTACAGTTGGGCCTAAAGAAGCTC
GAGCTTGGACTATTGTTAAAGGTACATTAGCTCCTCAAGCTGCAGGAATAATTCATACTGATTTTGAAAGAGGATTCATT
AAGGCAGAGGTTATATCTTATGAAGATTATATAAAATATAATGGTGAATCTAAAGCTAAAGAGCACGGACGTTTGCGAAT
TGAAGGCAAAGACTATGTGGTGCAAGATGGTGATATTATTCACTTTAGATTTAATGTTTAA

Upstream 100 bases:

>100_bases
GTTATATTCTATAGCAAGAAAAATTGCTGAAAATGTTGAGCTAGCAGTTCAAAAACAATTCAGTGAATTTATGTTTAAGA
TAAAAAATTGATTGATAAAA

Downstream 100 bases:

>100_bases
TCATTAATCTCTTTGCTTATAGTAAATTTTAGGTTGAATTAAGCCTTTTATATTTTACCTTTATTATATGATCTGGCGTT
ATTAATCTTAAGCCGTAATT

Product: putative GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MELRYGIVGLPNVGKSTLFNALTATQAANVGNYSFCTIESNIGIAAVPDPRLPKLADIAGSQSIIPTYVKFVDIAGLVKG
ASSGEGLGNKFLSHIRDVDAIIHVLRCFDISDITHIYSSIDPVRDAEIIELELILADLESIEKRLPALGKKSRGGDQKAK
EEIELLYHAQQILRNGQPVKNLQLYREKRHKFDRLHLLTTKPVIYVCNVLEHEAVSGNALCKAVQESDILGQSDMIIISS
SIESEIAILSTLEEKKDYLNILGLQETGLNKIIKSCYRLFDLNSYFTVGPKEARAWTIVKGTLAPQAAGIIHTDFERGFI
KAEVISYEDYIKYNGESKAKEHGRLRIEGKDYVVQDGDIIHFRFNV

Sequences:

>Translated_366_residues
MELRYGIVGLPNVGKSTLFNALTATQAANVGNYSFCTIESNIGIAAVPDPRLPKLADIAGSQSIIPTYVKFVDIAGLVKG
ASSGEGLGNKFLSHIRDVDAIIHVLRCFDISDITHIYSSIDPVRDAEIIELELILADLESIEKRLPALGKKSRGGDQKAK
EEIELLYHAQQILRNGQPVKNLQLYREKRHKFDRLHLLTTKPVIYVCNVLEHEAVSGNALCKAVQESDILGQSDMIIISS
SIESEIAILSTLEEKKDYLNILGLQETGLNKIIKSCYRLFDLNSYFTVGPKEARAWTIVKGTLAPQAAGIIHTDFERGFI
KAEVISYEDYIKYNGESKAKEHGRLRIEGKDYVVQDGDIIHFRFNV
>Mature_366_residues
MELRYGIVGLPNVGKSTLFNALTATQAANVGNYSFCTIESNIGIAAVPDPRLPKLADIAGSQSIIPTYVKFVDIAGLVKG
ASSGEGLGNKFLSHIRDVDAIIHVLRCFDISDITHIYSSIDPVRDAEIIELELILADLESIEKRLPALGKKSRGGDQKAK
EEIELLYHAQQILRNGQPVKNLQLYREKRHKFDRLHLLTTKPVIYVCNVLEHEAVSGNALCKAVQESDILGQSDMIIISS
SIESEIAILSTLEEKKDYLNILGLQETGLNKIIKSCYRLFDLNSYFTVGPKEARAWTIVKGTLAPQAAGIIHTDFERGFI
KAEVISYEDYIKYNGESKAKEHGRLRIEGKDYVVQDGDIIHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=370, Percent_Identity=44.3243243243243, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI58761502, Length=219, Percent_Identity=39.2694063926941, Blast_Score=149, Evalue=3e-36,
Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=48.6338797814208, Blast_Score=359, Evalue=1e-100,
Organism=Escherichia coli, GI1789574, Length=142, Percent_Identity=31.6901408450704, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=367, Percent_Identity=41.9618528610354, Blast_Score=271, Evalue=3e-73,
Organism=Saccharomyces cerevisiae, GI6319499, Length=370, Percent_Identity=42.4324324324324, Blast_Score=272, Evalue=5e-74,
Organism=Saccharomyces cerevisiae, GI6321773, Length=378, Percent_Identity=36.7724867724868, Blast_Score=214, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6321649, Length=161, Percent_Identity=37.2670807453416, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24640873, Length=373, Percent_Identity=43.4316353887399, Blast_Score=278, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24640877, Length=373, Percent_Identity=43.4316353887399, Blast_Score=278, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24640875, Length=373, Percent_Identity=43.4316353887399, Blast_Score=278, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24640879, Length=329, Percent_Identity=41.6413373860182, Blast_Score=232, Evalue=3e-61,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40672; Mature: 40672

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRYGIVGLPNVGKSTLFNALTATQAANVGNYSFCTIESNIGIAAVPDPRLPKLADIAG
CCEEECEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCCHHHHHCC
SQSIIPTYVKFVDIAGLVKGASSGEGLGNKFLSHIRDVDAIIHVLRCFDISDITHIYSSI
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
DPVRDAEIIELELILADLESIEKRLPALGKKSRGGDQKAKEEIELLYHAQQILRNGQPVK
CCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
NLQLYREKRHKFDRLHLLTTKPVIYVCNVLEHEAVSGNALCKAVQESDILGQSDMIIISS
HHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEC
SIESEIAILSTLEEKKDYLNILGLQETGLNKIIKSCYRLFDLNSYFTVGPKEARAWTIVK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEE
GTLAPQAAGIIHTDFERGFIKAEVISYEDYIKYNGESKAKEHGRLRIEGKDYVVQDGDII
ECCCCCCCCEEEECCCCCEEEEEEECHHHHEEECCCCCHHHCCEEEECCCEEEEECCCEE
HFRFNV
EEEECC
>Mature Secondary Structure
MELRYGIVGLPNVGKSTLFNALTATQAANVGNYSFCTIESNIGIAAVPDPRLPKLADIAG
CCEEECEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCCHHHHHCC
SQSIIPTYVKFVDIAGLVKGASSGEGLGNKFLSHIRDVDAIIHVLRCFDISDITHIYSSI
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
DPVRDAEIIELELILADLESIEKRLPALGKKSRGGDQKAKEEIELLYHAQQILRNGQPVK
CCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
NLQLYREKRHKFDRLHLLTTKPVIYVCNVLEHEAVSGNALCKAVQESDILGQSDMIIISS
HHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEC
SIESEIAILSTLEEKKDYLNILGLQETGLNKIIKSCYRLFDLNSYFTVGPKEARAWTIVK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEE
GTLAPQAAGIIHTDFERGFIKAEVISYEDYIKYNGESKAKEHGRLRIEGKDYVVQDGDII
ECCCCCCCCEEEECCCCCEEEEEEECHHHHEEECCCCCHHHCCEEEECCCEEEEECCCEE
HFRFNV
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]