| Definition | Orientia tsutsugamushi Boryong, complete genome. |
|---|---|
| Accession | NC_009488 |
| Length | 2,127,051 |
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The map label for this gene is 148284911
Identifier: 148284911
GI number: 148284911
Start: 1635074
End: 1636264
Strand: Direct
Name: 148284911
Synonym: OTBS_1683
Alternate gene names: NA
Gene position: 1635074-1636264 (Clockwise)
Preceding gene: 148284910
Following gene: 148284912
Centisome position: 76.87
GC content: 30.9
Gene sequence:
>1191_bases ATGATTAAAGGTTATTTACATAAAATTCTTGATAAAGTTAATATTCTTTCTAATAAAAACACCTGCTACAAAAATTTTCA GCCTTTGGACTTACAATATGTCGCTAGTAGCAATTATACTACAGGAGCTACAGTTAGCGCTTATTTTCAAAATGTTATTG TGTATCGGTGTGTTAATTTGATAGCTAACTCTGCAAGTCATGTGCCATGGTATATAAAAAAAAAGAAACAGCTTACATAT GAAAGACTTTTACATCATCCTATACTTGATTTACTACAACGCCCAAATTATAGCGTATCTGGTGCAGATTTTTTTTCTGA GTTGATTATTAATAAACTACTTACAGGTAATGCTTTTATATTGGCTACAGGTATAAAGGATATGTTACCTAAAGAACTAT ATTTACTCAATATTAATGATGTAGAAGTACAAGAACAAGCTGGGCAAGTGATAGGATATCGCTATCCTAGTAATAGTAAC AACTTTTATCGAATTAGCAATACACATGATAAGTGTCCGATATTACATATGAAAAATTATAATCCATTGAGTAAGAAGTA TGGTATGTCTTGTTTAGATCCAGCCTCTATGCCAATAACTTTATATAATCAGGTTGTGCAATGGAATTATGCTTTATTAA AAAATGGAGCTCGTCCCAGTGGAGCTCTGATATTAAAGGATAGTAATTCTTATTTAAGTGAAGAGCAATTTGAAAGATTA AGAGATCAATTATTACAAAAATATACTAGTTCATCAAATTCTGGTGCACCTCTGTTATTAGAGGGAGGACTTGATTGGAA AGAAATGAGTATTAATCCAAAAGATATGGATTTTATGGAATCTAAGAATTCTGCTGCTAGAGAAATTGCATTAGCATTTG GTGTACCTCCGCAATTATTAGGAATTAATGGTGATAATACATATAGCAATATGCAGGAGGCTAGATTAGCATTATGGGAA GAAACACTGATTCCATTACTTGACCGTATTGCTGATTCGTTAACTATGTGGTTCTCAAAATTATTTAAAGAAAATATTAT TATTGATTTTGATAGAGACTGTATATCAGCTTTAACAGAAAAACGAGAAAATTTATGGTCTAAAATTTCTACAGCTAATT TTATGACAATTAATGAGAAGAGACGCATAATATCTCTTCCTCCGATAGATGGAGGAGATAAATTAATATGA
Upstream 100 bases:
>100_bases TTGGGTTAAACGATAAATGATATCAAAATAAATTTAGTAAATAACTTCTTAGTCTATTGTTAAACACTGTTATTCTATAA TTATTTAAGTAGTGGTAGCA
Downstream 100 bases:
>100_bases GTTTTGTACATAGAGACTATGAATGAGCAATTAATTAAACTATCGCAGCTTAGCATTTACTTAGTTAATATTTTAGACAA GGAGTTGATTAACCTGCAAA
Product: HK97 family phage portal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN NFYRISNTHDKCPILHMKNYNPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
Sequences:
>Translated_396_residues MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN NFYRISNTHDKCPILHMKNYNPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI >Mature_396_residues MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN NFYRISNTHDKCPILHMKNYNPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
Specific function: Unknown
COG id: COG4695
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage portal family. HK97 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006944 - InterPro: IPR006427 [H]
Pfam domain/function: PF04860 Phage_portal [H]
EC number: NA
Molecular weight: Translated: 45151; Mature: 45151
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNL CCHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI HHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY EECCHHHHCCCCEEEEECCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC NPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC >Mature Secondary Structure MIKGYLHKILDKVNILSNKNTCYKNFQPLDLQYVASSNYTTGATVSAYFQNVIVYRCVNL CCHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI HHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY EECCHHHHCCCCEEEEECCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC NPLSKKYGMSCLDPASMPITLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA