Click here to switch to the map view.

The map label for this gene is carD [H]

Identifier: 148284672

GI number: 148284672

Start: 1188457

End: 1188966

Strand: Direct

Name: carD [H]

Synonym: OTBS_1218

Alternate gene names: 148284672

Gene position: 1188457-1188966 (Clockwise)

Preceding gene: 148284671

Following gene: 148284673

Centisome position: 55.87

GC content: 32.75

Gene sequence:

>510_bases
ATGGAACATCAACAACAGGAACAATTTAAGATTGGAGATAAGGTAGTTTATCCATCTCATGGAGTAGGTGAGGTAATTGG
TATTGAAAATCAAGTATTTTGCGGAAAAGAGTTAAGGGTGTATGTTGTTTCCTTTCCAATGGATAAAATGACTTTAAAGG
TGCCAGTAAATAGCAAAAGTACTTCAGGATTAAGAGCGATCAGTTATAAAACTGACACTGATAAAATATATAAAATATTA
TCCAGTCAGTCTCAACCAGGAAATAGGATGTGGAGTCGCCGTGCTCAAGAATATGAAAATAAGATTAATTCTGGAGATCT
TTGTTCTATTGCAGAAGTAGTTAGAGACTTGTATAAAAATGCTGAAGTTGATCGCTCTTATAGCGAAAGGATAATTTATG
AGTCAGCAATAACTAGACTTGCAAGAGAGTTAGCTATCTTGGAATCTGTAAAATATGAAGAAATAATTGAAAAGCTAACT
GAAATCTTGAAAAATAGAAATACTGTATAA

Upstream 100 bases:

>100_bases
TATTAACTTGTTGTAACTCAAAAGCTATATGAGTTTTTTTAATAGCTTTCAAGGTTTATAATTTAAGGTATGTAAAAAAT
TTAAAGATTATACTGAAAGT

Downstream 100 bases:

>100_bases
TCAACATACATAAGAAGTTTATTGTGAATGTTATTGGTATTGAGTCTAGTTGTGATGATACAGCTATTGCTATAGTTAAT
AGTAATAGAGAGATAATTGC

Product: putative transcriptional factor regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MEHQQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSTSGLRAISYKTDTDKIYKIL
SSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYKNAEVDRSYSERIIYESAITRLARELAILESVKYEEIIEKLT
EILKNRNTV

Sequences:

>Translated_169_residues
MEHQQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSTSGLRAISYKTDTDKIYKIL
SSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYKNAEVDRSYSERIIYESAITRLARELAILESVKYEEIIEKLT
EILKNRNTV
>Mature_169_residues
MEHQQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKSTSGLRAISYKTDTDKIYKIL
SSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYKNAEVDRSYSERIIYESAITRLARELAILESVKYEEIIEKLT
EILKNRNTV

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19443; Mature: 19443

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHQQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKS
CCCCHHHHHHCCCEEECCCCCCCCEECCCCCEEECCCEEEEEEEECCCCEEEEEECCCCC
TSGLRAISYKTDTDKIYKILSSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYKN
CCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
AEVDRSYSERIIYESAITRLARELAILESVKYEEIIEKLTEILKNRNTV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEHQQQEQFKIGDKVVYPSHGVGEVIGIENQVFCGKELRVYVVSFPMDKMTLKVPVNSKS
CCCCHHHHHHCCCEEECCCCCCCCEECCCCCEEECCCEEEEEEEECCCCEEEEEECCCCC
TSGLRAISYKTDTDKIYKILSSQSQPGNRMWSRRAQEYENKINSGDLCSIAEVVRDLYKN
CCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
AEVDRSYSERIIYESAITRLARELAILESVKYEEIIEKLTEILKNRNTV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]