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The map label for this gene is dnaQ [H]

Identifier: 148284671

GI number: 148284671

Start: 1187569

End: 1188237

Strand: Direct

Name: dnaQ [H]

Synonym: OTBS_1217

Alternate gene names: 148284671

Gene position: 1187569-1188237 (Clockwise)

Preceding gene: 148284660

Following gene: 148284672

Centisome position: 55.83

GC content: 31.69

Gene sequence:

>669_bases
ATGCAAAGAAAGATAGTATTAGATACAGAAACAAGTGGTCTTGACCATAAGCAAGGACATAGAATTATAGAAATAGGCGC
AGTTGAGTTAGATAGCGATTGTACAGAAATACGCAACACTTTTCATTACTATATAAATCCAGAGCGAGATATATCTAAAG
AAGCATATAAAGTACATGGATTATCTCGTGATTTTCTTTCTGATAAGCCTAAGTTTCGAGAAATTGTTGATGAGTTTTTG
CAATTTATTGACAGAGCGCAGCTTATTATGCATAATGCAAATTTTGATATGCAGTTCTTAAATTCTGAATTATTTAGAAT
TCGTAAATCTGCTATTCCAAATACTTGTGTAATAGATACTTTAACATTAGCAAGAAAGCGCTTTCCAAAAGAAAGGGTGA
ATCTAGACGCATTATGTTATAAATTTCGTATTGATACTTCAGATAGGCATTTGCATGGAGCTTTAAAGGATGCTAAGTTG
CTTGCTTTAGTTTATGGACGTATGATGCATGGTATGCAGGTAGTTCTACTTGATGATACTAAACATAACAAAGAGATAAT
AATATCTAATTGTGCTACAAACATTAACAATACAGTAGTTGTAGAGCCTACATGCGATGAAATTATACAACATCAACAAT
TGTTATCTAAAATTCATAAGCATTTGTAA

Upstream 100 bases:

>100_bases
ATATTGAACTTGAGCTAAGATTAAGTATGGTTATATTTGTATTGCACAAATAGTAAACTTAAATTATAAGTCTACTTAAA
CCAATAAATTAGTAGTTAAT

Downstream 100 bases:

>100_bases
AAAGAATTATAGTATTTATTTTTTGTATATTAAGTATCTTGAAGTAAGAAATAAAATATGGTATAATTGCCGCTTAATAG
CATATTTAATTGTGTTTAAA

Product: DNA polymerase III epsilon chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGLSRDFLSDKPKFREIVDEFL
QFIDRAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVIDTLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKL
LALVYGRMMHGMQVVLLDDTKHNKEIIISNCATNINNTVVVEPTCDEIIQHQQLLSKIHKHL

Sequences:

>Translated_222_residues
MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGLSRDFLSDKPKFREIVDEFL
QFIDRAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVIDTLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKL
LALVYGRMMHGMQVVLLDDTKHNKEIIISNCATNINNTVVVEPTCDEIIQHQQLLSKIHKHL
>Mature_222_residues
MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGLSRDFLSDKPKFREIVDEFL
QFIDRAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVIDTLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKL
LALVYGRMMHGMQVVLLDDTKHNKEIIISNCATNINNTVVVEPTCDEIIQHQQLLSKIHKHL

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=232, Percent_Identity=43.1034482758621, Blast_Score=171, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 25840; Mature: 25840

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHG
CCCEEEEECCCCCCCCCCCCEEEEEECEEECCHHHHHHCCEEEEECCCHHHHHHHHHHHC
LSRDFLSDKPKFREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVIDT
CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHGMQVVLLDDT
HHHHHHHCCHHHCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
KHNKEIIISNCATNINNTVVVEPTCDEIIQHQQLLSKIHKHL
CCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHG
CCCEEEEECCCCCCCCCCCCEEEEEECEEECCHHHHHHCCEEEEECCCHHHHHHHHHHHC
LSRDFLSDKPKFREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVIDT
CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHGMQVVLLDDT
HHHHHHHCCHHHCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
KHNKEIIISNCATNINNTVVVEPTCDEIIQHQQLLSKIHKHL
CCCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]