BacMap

Definition	Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession	NC_009484
Length	3,389,227

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The map label for this gene is ytfR [H]

Identifier: 148259338

GI number: 148259338

Start: 371049

End: 371897

Strand: Reverse

Name: ytfR [H]

Synonym: Acry_0319

Alternate gene names: 148259338

Gene position: 371897-371049 (Counterclockwise)

Preceding gene: 148259349

Following gene: 148259337

Centisome position: 10.97

GC content: 66.08

Gene sequence:

>849_bases
ATGGGCGCAACAGGCAACGCGATCGCAGCTTCCGGCGGCGGCACGCCGAACGAAGACAGGAGGGCGGCCGGCGGCTGGTC
CGACATCGTCCGCGCCGAGAAACTCTGCGTCTCGTTCGGCAAGGTCCGCGCCCTCGACAATATAGATCTGGCGATCGGGC
GCAACGAGATTGTCGGCCTGATCGGCGATAACGGCGCCGGCAAGTCCACCCTCATCAAGGCGCTGACCGGCGTGGTGCGG
CCGAGTTCGGGGCGGCTCTATATTCGCGACGAGGCGGTGGACCTCTACAATTATTCGGTCCGGCGCGCGCATTCGCTGAA
ATTCGAGACCGTGTACCAGGAGAAGTCGCTCGGCGAGAAGCAGCCGCTGTGGCGGAACTTCTTCGTCGGCCGGCAGATCG
TCAACCGCTTCGGCTTCATCAACGTGCGCGAGCAGCGGCGCATCGCCAACGAGATCCTGCAGCGCCAGCTCGGGTTCCGC
GGCGTCGGGATCGACGCGGATTCGACCGTCGCCAAGCTGTCGGGCGGCGAGCGGCAGGGCATCGCGATCGGCCGGGCGAT
GCATTTCGATTCCGACCTGATCATCCTCGACGAGCCGACCACGGCGCTCGCCATCAGCGAGGTGCAGAAGGTGCTGGACT
TCGTCCGCTCGATCAAGCGCTCGGGGCGGGCGGCGATCTATATCGAGCACAATCTCGCGCATGTGCACGCGCTGGCGGAC
CGGCTGGTGGTGCTCGACCGCGGGCGCATCGTCGCCAACATACGGCCGGCGGAGATGACCCTCGAGGATCTCACCCGGTT
CCTGATCGACCTGCAACACGGCACGCCGGCAACAGGAGGCCACGCATGA

Upstream 100 bases:

>100_bases
GGGCCGCACGGAAAATTGTAGGCCGGCGATAACGGAACTGTTGACTTGACCTGTTTTTCATCGATAATCAACGGCTGGAA
ACGTCAACGAAAGCCGAAAC

Downstream 100 bases:

>100_bases
GCGGCAGCGACGTGAGCACGGGACGCCCGGCGGCGCCGAAATCCTCCCCGCGCTGGCACGCGCATCTCGGCGCGGTGCCG
ATCATCGTCGTGTTCTTCGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MGATGNAIAASGGGTPNEDRRAAGGWSDIVRAEKLCVSFGKVRALDNIDLAIGRNEIVGLIGDNGAGKSTLIKALTGVVR
PSSGRLYIRDEAVDLYNYSVRRAHSLKFETVYQEKSLGEKQPLWRNFFVGRQIVNRFGFINVREQRRIANEILQRQLGFR
GVGIDADSTVAKLSGGERQGIAIGRAMHFDSDLIILDEPTTALAISEVQKVLDFVRSIKRSGRAAIYIEHNLAHVHALAD
RLVVLDRGRIVANIRPAEMTLEDLTRFLIDLQHGTPATGGHA

Sequences:

>Translated_282_residues
MGATGNAIAASGGGTPNEDRRAAGGWSDIVRAEKLCVSFGKVRALDNIDLAIGRNEIVGLIGDNGAGKSTLIKALTGVVR
PSSGRLYIRDEAVDLYNYSVRRAHSLKFETVYQEKSLGEKQPLWRNFFVGRQIVNRFGFINVREQRRIANEILQRQLGFR
GVGIDADSTVAKLSGGERQGIAIGRAMHFDSDLIILDEPTTALAISEVQKVLDFVRSIKRSGRAAIYIEHNLAHVHALAD
RLVVLDRGRIVANIRPAEMTLEDLTRFLIDLQHGTPATGGHA
>Mature_281_residues
GATGNAIAASGGGTPNEDRRAAGGWSDIVRAEKLCVSFGKVRALDNIDLAIGRNEIVGLIGDNGAGKSTLIKALTGVVRP
SSGRLYIRDEAVDLYNYSVRRAHSLKFETVYQEKSLGEKQPLWRNFFVGRQIVNRFGFINVREQRRIANEILQRQLGFRG
VGIDADSTVAKLSGGERQGIAIGRAMHFDSDLIILDEPTTALAISEVQKVLDFVRSIKRSGRAAIYIEHNLAHVHALADR
LVVLDRGRIVANIRPAEMTLEDLTRFLIDLQHGTPATGGHA

Specific function: Unknown

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=213, Percent_Identity=26.7605633802817, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI30795238, Length=213, Percent_Identity=26.7605633802817, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI31657092, Length=217, Percent_Identity=26.2672811059908, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI21536376, Length=233, Percent_Identity=23.175965665236, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI105990541, Length=230, Percent_Identity=26.0869565217391, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=210, Percent_Identity=27.1428571428571, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI6005701, Length=220, Percent_Identity=25.4545454545455, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI42490749, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI153792144, Length=222, Percent_Identity=26.1261261261261, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI27477115, Length=223, Percent_Identity=26.0089686098655, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=27.3584905660377, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI255708477, Length=223, Percent_Identity=26.457399103139, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI148612844, Length=223, Percent_Identity=26.457399103139, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI27436953, Length=211, Percent_Identity=24.6445497630332, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI42741659, Length=213, Percent_Identity=27.6995305164319, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI9961252, Length=241, Percent_Identity=26.9709543568465, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI4505771, Length=241, Percent_Identity=26.9709543568465, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI9961250, Length=241, Percent_Identity=26.9709543568465, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI48995001, Length=243, Percent_Identity=34.5679012345679, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=31.4893617021277, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788897, Length=217, Percent_Identity=34.5622119815668, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790190, Length=232, Percent_Identity=29.7413793103448, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788472, Length=236, Percent_Identity=29.6610169491525, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789991, Length=236, Percent_Identity=29.6610169491525, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787758, Length=213, Percent_Identity=34.7417840375587, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788210, Length=214, Percent_Identity=29.9065420560748, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082268, Length=219, Percent_Identity=31.0502283105023, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790739, Length=260, Percent_Identity=25, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789962, Length=214, Percent_Identity=30.8411214953271, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787792, Length=239, Percent_Identity=28.0334728033473, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=29.0178571428571, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=28.0701754385965, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1786803, Length=237, Percent_Identity=26.5822784810127, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789864, Length=234, Percent_Identity=26.4957264957265, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=28.099173553719, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788761, Length=236, Percent_Identity=27.1186440677966, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=27.027027027027, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=28.6384976525822, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=25.4310344827586, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787759, Length=258, Percent_Identity=30.2325581395349, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87081791, Length=262, Percent_Identity=24.8091603053435, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87081782, Length=253, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786398, Length=211, Percent_Identity=26.5402843601896, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=25.1082251082251, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789032, Length=233, Percent_Identity=28.3261802575107, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788165, Length=222, Percent_Identity=28.8288288288288, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789593, Length=228, Percent_Identity=27.1929824561404, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786319, Length=243, Percent_Identity=28.8065843621399, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787182, Length=226, Percent_Identity=28.7610619469027, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787547, Length=237, Percent_Identity=24.8945147679325, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=29.0909090909091, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790544, Length=242, Percent_Identity=27.6859504132231, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI48994943, Length=234, Percent_Identity=24.3589743589744, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786872, Length=230, Percent_Identity=26.5217391304348, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787370, Length=252, Percent_Identity=25, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788506, Length=215, Percent_Identity=28.3720930232558, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789963, Length=239, Percent_Identity=28.0334728033473, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786698, Length=217, Percent_Identity=26.7281105990783, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786253, Length=207, Percent_Identity=28.0193236714976, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787089, Length=219, Percent_Identity=26.027397260274, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=25.7510729613734, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693107, Length=254, Percent_Identity=24.0157480314961, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367384, Length=179, Percent_Identity=29.0502793296089, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787548, Length=238, Percent_Identity=26.890756302521, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082267, Length=210, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=24.8868778280543, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786981, Length=210, Percent_Identity=27.1428571428571, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=219, Percent_Identity=26.027397260274, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI115533608, Length=217, Percent_Identity=26.2672811059908, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=227, Percent_Identity=29.0748898678414, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=227, Percent_Identity=29.0748898678414, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=227, Percent_Identity=29.0748898678414, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=211, Percent_Identity=24.6445497630332, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17555800, Length=219, Percent_Identity=25.5707762557078, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=221, Percent_Identity=32.1266968325792, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=215, Percent_Identity=30.6976744186047, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=216, Percent_Identity=28.2407407407407, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=215, Percent_Identity=28.8372093023256, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=244, Percent_Identity=28.2786885245902, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71992285, Length=216, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=213, Percent_Identity=29.5774647887324, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666092, Length=213, Percent_Identity=29.5774647887324, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=26.1467889908257, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24643674, Length=214, Percent_Identity=26.1682242990654, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24659289, Length=223, Percent_Identity=30.9417040358744, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI85726357, Length=239, Percent_Identity=29.7071129707113, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281363262, Length=212, Percent_Identity=30.6603773584906, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24653245, Length=212, Percent_Identity=30.6603773584906, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28571209, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641565, Length=217, Percent_Identity=31.3364055299539, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221500419, Length=218, Percent_Identity=28.8990825688073, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30821; Mature: 30689

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGATGNAIAASGGGTPNEDRRAAGGWSDIVRAEKLCVSFGKVRALDNIDLAIGRNEIVGL
CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEE
IGDNGAGKSTLIKALTGVVRPSSGRLYIRDEAVDLYNYSVRRAHSLKFETVYQEKSLGEK
ECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEHHHHHHHHHHCCCHHHHHHHHCCCCC
QPLWRNFFVGRQIVNRFGFINVREQRRIANEILQRQLGFRGVGIDADSTVAKLSGGERQG
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCC
IAIGRAMHFDSDLIILDEPTTALAISEVQKVLDFVRSIKRSGRAAIYIEHNLAHVHALAD
EEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
RLVVLDRGRIVANIRPAEMTLEDLTRFLIDLQHGTPATGGHA
HEEEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GATGNAIAASGGGTPNEDRRAAGGWSDIVRAEKLCVSFGKVRALDNIDLAIGRNEIVGL
CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEE
IGDNGAGKSTLIKALTGVVRPSSGRLYIRDEAVDLYNYSVRRAHSLKFETVYQEKSLGEK
ECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEHHHHHHHHHHCCCHHHHHHHHCCCCC
QPLWRNFFVGRQIVNRFGFINVREQRRIANEILQRQLGFRGVGIDADSTVAKLSGGERQG
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCC
IAIGRAMHFDSDLIILDEPTTALAISEVQKVLDFVRSIKRSGRAAIYIEHNLAHVHALAD
EEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
RLVVLDRGRIVANIRPAEMTLEDLTRFLIDLQHGTPATGGHA
HEEEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]