Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 148259337

GI number: 148259337

Start: 370018

End: 371052

Strand: Reverse

Name: rbsC [H]

Synonym: Acry_0318

Alternate gene names: 148259337

Gene position: 371052-370018 (Counterclockwise)

Preceding gene: 148259338

Following gene: 148259336

Centisome position: 10.95

GC content: 67.54

Gene sequence:

>1035_bases
ATGAGCGGCAGCGACGTGAGCACGGGACGCCCGGCGGCGCCGAAATCCTCCCCGCGCTGGCACGCGCATCTCGGCGCGGT
GCCGATCATCGTCGTGTTCTTCGCGCTGATCGGCATCTATATCGGCTTCGCGCCGGAGGTTTTCCTCCGCTGGCCGATCT
ACAATTCCTTCCTCGTCACGATTCCGCCGATGCTGGTGCTCTCGCTCGGCCTCACGCTGGTGATCGCGGCCGGGGAGATC
GACCTGTCGTTCCCGGCGGTCATCGCGCTGTCGGGCTTCCTGTTCGCGTTCTGCGCCGACAAGCTGCACATGCCCTGGCT
CGGCCTGGTCGCCGCGATCGGCGGCGGCGCGCTGGTGGGCGTGATCAATGGCTGGCTGGTCGCCGCACTCGGCATTCCCT
CGATCATCATCACCATCGGCACGTCGTTCTTCTGGAGCGGTGTGGCGACCGTGCTTTCGGGCGGCCTGTCCTACGCGCTG
AACGACCTGACCGGCACCGTGATCGCGCGGGTGTTCTCGGGGACGCTGCTCGGCGTGCCGGTGGAGGCGCTGTGGGCGGT
GGCCGTCGCGGCGCTGATCTGGGCGATCCTGAACCGGCACCGCTTCGGCGAGCACCTGCTGTTCATCGGCGATTCGCGCG
AGGTGGCGCGGGTGGTCGGGATCAACACGGTCCGCGAGCGGATCAAGCTGTTCACCCTGATGGGCGCGCTCGCCGGCTTC
GCGAGCTTCCTGATGACCGTCGCCAATCTCAGCTATTTCTCGACGCAGGGCCAGGGGCTGCTGCTCTCGGCGCTCGCCGC
CGTGTTCATCGGCGGTTCCTCGGTGTTCGGCGGATCGGCCACCGTGGTCGGCAGTTTCTTCGGCGCCATGATCATCGGCA
TGCTCGATGCCGGGATCGTCGCGACCGGGGTTTCGGGGTTCTGGGTCGAGGTGATCGTCGGCCTCGTGTTCGTCGCCGCG
GTGGTGCTGCACACCGGTCTCGGCGACCCGGCGAGGGTGAAGGCTCTGCAGCGACGACTGATGCAACGCGAGTAA

Upstream 100 bases:

>100_bases
GCATCGTCGCCAACATACGGCCGGCGGAGATGACCCTCGAGGATCTCACCCGGTTCCTGATCGACCTGCAACACGGCACG
CCGGCAACAGGAGGCCACGC

Downstream 100 bases:

>100_bases
AGCCCGCCGGCATGACGGGCACCTCAAGGCAAACAAAGGGAGAGACGGGATGAAACTCAGGATGTCCTTCGCTTCGGCGG
CCGCCATCGCGGCGGCGCTG

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MSGSDVSTGRPAAPKSSPRWHAHLGAVPIIVVFFALIGIYIGFAPEVFLRWPIYNSFLVTIPPMLVLSLGLTLVIAAGEI
DLSFPAVIALSGFLFAFCADKLHMPWLGLVAAIGGGALVGVINGWLVAALGIPSIIITIGTSFFWSGVATVLSGGLSYAL
NDLTGTVIARVFSGTLLGVPVEALWAVAVAALIWAILNRHRFGEHLLFIGDSREVARVVGINTVRERIKLFTLMGALAGF
ASFLMTVANLSYFSTQGQGLLLSALAAVFIGGSSVFGGSATVVGSFFGAMIIGMLDAGIVATGVSGFWVEVIVGLVFVAA
VVLHTGLGDPARVKALQRRLMQRE

Sequences:

>Translated_344_residues
MSGSDVSTGRPAAPKSSPRWHAHLGAVPIIVVFFALIGIYIGFAPEVFLRWPIYNSFLVTIPPMLVLSLGLTLVIAAGEI
DLSFPAVIALSGFLFAFCADKLHMPWLGLVAAIGGGALVGVINGWLVAALGIPSIIITIGTSFFWSGVATVLSGGLSYAL
NDLTGTVIARVFSGTLLGVPVEALWAVAVAALIWAILNRHRFGEHLLFIGDSREVARVVGINTVRERIKLFTLMGALAGF
ASFLMTVANLSYFSTQGQGLLLSALAAVFIGGSSVFGGSATVVGSFFGAMIIGMLDAGIVATGVSGFWVEVIVGLVFVAA
VVLHTGLGDPARVKALQRRLMQRE
>Mature_343_residues
SGSDVSTGRPAAPKSSPRWHAHLGAVPIIVVFFALIGIYIGFAPEVFLRWPIYNSFLVTIPPMLVLSLGLTLVIAAGEID
LSFPAVIALSGFLFAFCADKLHMPWLGLVAAIGGGALVGVINGWLVAALGIPSIIITIGTSFFWSGVATVLSGGLSYALN
DLTGTVIARVFSGTLLGVPVEALWAVAVAALIWAILNRHRFGEHLLFIGDSREVARVVGINTVRERIKLFTLMGALAGFA
SFLMTVANLSYFSTQGQGLLLSALAAVFIGGSSVFGGSATVVGSFFGAMIIGMLDAGIVATGVSGFWVEVIVGLVFVAAV
VLHTGLGDPARVKALQRRLMQRE

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=267, Percent_Identity=30.7116104868914, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693152, Length=340, Percent_Identity=27.0588235294118, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790524, Length=296, Percent_Identity=28.3783783783784, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788896, Length=258, Percent_Identity=28.2945736434109, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=30.3630363036304, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=29.8611111111111, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789992, Length=320, Percent_Identity=25.625, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787794, Length=297, Percent_Identity=26.9360269360269, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI145693214, Length=244, Percent_Identity=31.5573770491803, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35955; Mature: 35824

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSDVSTGRPAAPKSSPRWHAHLGAVPIIVVFFALIGIYIGFAPEVFLRWPIYNSFLVT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCHHHH
IPPMLVLSLGLTLVIAAGEIDLSFPAVIALSGFLFAFCADKLHMPWLGLVAAIGGGALVG
HHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHH
VINGWLVAALGIPSIIITIGTSFFWSGVATVLSGGLSYALNDLTGTVIARVFSGTLLGVP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
VEALWAVAVAALIWAILNRHRFGEHLLFIGDSREVARVVGINTVRERIKLFTLMGALAGF
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFLMTVANLSYFSTQGQGLLLSALAAVFIGGSSVFGGSATVVGSFFGAMIIGMLDAGIV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ATGVSGFWVEVIVGLVFVAAVVLHTGLGDPARVKALQRRLMQRE
HHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGSDVSTGRPAAPKSSPRWHAHLGAVPIIVVFFALIGIYIGFAPEVFLRWPIYNSFLVT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCHHHH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HHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]