Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

Click here to switch to the map view.

The map label for this gene is 148259336

Identifier: 148259336

GI number: 148259336

Start: 368973

End: 369968

Strand: Reverse

Name: 148259336

Synonym: Acry_0317

Alternate gene names: NA

Gene position: 369968-368973 (Counterclockwise)

Preceding gene: 148259337

Following gene: 148259333

Centisome position: 10.92

GC content: 67.37

Gene sequence:

>996_bases
ATGAAACTCAGGATGTCCTTCGCTTCGGCGGCCGCCATCGCGGCGGCGCTGTTCTGCGGCACGGCCGCCGCGGCCCCGCA
GCACAAGCTCGGCGCCGGGCTGACCATGTATTTCCAGATGGGCGGCAGCCCCGGCGACGCCTCGACGCTGCCGCGCGAAC
TCGGCGCCAAGGCGGCGGCCAAGGCGCTCGGCGTGCGGCTGATCTCGCAATATTCCGACTGGCAGCCGGAAAAGATGATC
GAGCAGTTCCGCCAGGCCATCGCCGCCGGGCCGCAATGCGCCGAGATCATGGGCCATCCGGGCAACGCCGCCTTCGCGCC
GCTGGTGAGCAAGGCCGAGGCCCAGGGCATGGTGGTCACCGCCGGGAACGTGCCGCTGCCCAAGCTCGAGGCGAAATACC
GGACCAACGGGTTCGGCTATGTCGGCACCTATCTCGTGCAGGGCGGCGAGACCACCGCGGCGGCGATGGTCAAGGCCGGG
CACCTGAAGCCGGGTGACGAGGCGCTCGAATACGGCGTCTTCGCCGAGGGGATCCGCGGCGAATCCGACGAGGGCCTGGT
GATGGGGCTGAAGAAGGCCGGGCTCAAGGTCTACAAGCTCAACATCTCGAACGCCGTCAACGCCGATCCGGCGCTGTCGG
TGCCGATCCTCGTCGCCTTCATCGAGCGGCATCCGAAGCTCAAGGCGATCGGCACGCAGCAGGGGCTGGTGACCTCGTTC
ATTCCGAAGGCGTTGCAGGAGGCCGGCAAGAAGCCCGGGCAGATCGTCGTCGGCGGCATCGATCTCGCGCCGACCACCAT
CGCCGGGGTGAAGAGCGGCTACATCGCCGCGACGCTGAACCAGCAGCTCTACATGCAGGGCTTCCTGCCGGTGGTGCAGT
GCGTGCTGACCAAGCGGTTCGACCTCGAGGGCATGAACGTCAACACCGCCGCCGGCACCGACGACAAGGCGCTGCTCGAC
AAGATCGAGCCGCTGATCAAGAAGGGCTATTACTGA

Upstream 100 bases:

>100_bases
GACCCGGCGAGGGTGAAGGCTCTGCAGCGACGACTGATGCAACGCGAGTAAAGCCCGCCGGCATGACGGGCACCTCAAGG
CAAACAAAGGGAGAGACGGG

Downstream 100 bases:

>100_bases
TCCGGCGCTGACCCGGCGCCGGCCACGAGCGCCGGGTCGAGGCCGACGAGGTCGCGGTAGCGCGCCGTGTCGGTCGCGCC
CTCGGTATTGAAGACCAGGA

Product: ABC-type sugar transport system periplasmic component-like protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKLRMSFASAAAIAAALFCGTAAAAPQHKLGAGLTMYFQMGGSPGDASTLPRELGAKAAAKALGVRLISQYSDWQPEKMI
EQFRQAIAAGPQCAEIMGHPGNAAFAPLVSKAEAQGMVVTAGNVPLPKLEAKYRTNGFGYVGTYLVQGGETTAAAMVKAG
HLKPGDEALEYGVFAEGIRGESDEGLVMGLKKAGLKVYKLNISNAVNADPALSVPILVAFIERHPKLKAIGTQQGLVTSF
IPKALQEAGKKPGQIVVGGIDLAPTTIAGVKSGYIAATLNQQLYMQGFLPVVQCVLTKRFDLEGMNVNTAAGTDDKALLD
KIEPLIKKGYY

Sequences:

>Translated_331_residues
MKLRMSFASAAAIAAALFCGTAAAAPQHKLGAGLTMYFQMGGSPGDASTLPRELGAKAAAKALGVRLISQYSDWQPEKMI
EQFRQAIAAGPQCAEIMGHPGNAAFAPLVSKAEAQGMVVTAGNVPLPKLEAKYRTNGFGYVGTYLVQGGETTAAAMVKAG
HLKPGDEALEYGVFAEGIRGESDEGLVMGLKKAGLKVYKLNISNAVNADPALSVPILVAFIERHPKLKAIGTQQGLVTSF
IPKALQEAGKKPGQIVVGGIDLAPTTIAGVKSGYIAATLNQQLYMQGFLPVVQCVLTKRFDLEGMNVNTAAGTDDKALLD
KIEPLIKKGYY
>Mature_331_residues
MKLRMSFASAAAIAAALFCGTAAAAPQHKLGAGLTMYFQMGGSPGDASTLPRELGAKAAAKALGVRLISQYSDWQPEKMI
EQFRQAIAAGPQCAEIMGHPGNAAFAPLVSKAEAQGMVVTAGNVPLPKLEAKYRTNGFGYVGTYLVQGGETTAAAMVKAG
HLKPGDEALEYGVFAEGIRGESDEGLVMGLKKAGLKVYKLNISNAVNADPALSVPILVAFIERHPKLKAIGTQQGLVTSF
IPKALQEAGKKPGQIVVGGIDLAPTTIAGVKSGYIAATLNQQLYMQGFLPVVQCVLTKRFDLEGMNVNTAAGTDDKALLD
KIEPLIKKGYY

Specific function: Unknown

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34654; Mature: 34654

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRMSFASAAAIAAALFCGTAAAAPQHKLGAGLTMYFQMGGSPGDASTLPRELGAKAAA
CEEECHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCHHHCHHHHHHHHHH
KALGVRLISQYSDWQPEKMIEQFRQAIAAGPQCAEIMGHPGNAAFAPLVSKAEAQGMVVT
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCEEEE
AGNVPLPKLEAKYRTNGFGYVGTYLVQGGETTAAAMVKAGHLKPGDEALEYGVFAEGIRG
ECCCCCCCCCHHHCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
ESDEGLVMGLKKAGLKVYKLNISNAVNADPALSVPILVAFIERHPKLKAIGTQQGLVTSF
CCCCCEEEEHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHH
IPKALQEAGKKPGQIVVGGIDLAPTTIAGVKSGYIAATLNQQLYMQGFLPVVQCVLTKRF
HHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHC
DLEGMNVNTAAGTDDKALLDKIEPLIKKGYY
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLRMSFASAAAIAAALFCGTAAAAPQHKLGAGLTMYFQMGGSPGDASTLPRELGAKAAA
CEEECHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEECCCCCCHHHCHHHHHHHHHH
KALGVRLISQYSDWQPEKMIEQFRQAIAAGPQCAEIMGHPGNAAFAPLVSKAEAQGMVVT
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCEEEE
AGNVPLPKLEAKYRTNGFGYVGTYLVQGGETTAAAMVKAGHLKPGDEALEYGVFAEGIRG
ECCCCCCCCCHHHCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
ESDEGLVMGLKKAGLKVYKLNISNAVNADPALSVPILVAFIERHPKLKAIGTQQGLVTSF
CCCCCEEEEHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHH
IPKALQEAGKKPGQIVVGGIDLAPTTIAGVKSGYIAATLNQQLYMQGFLPVVQCVLTKRF
HHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHC
DLEGMNVNTAAGTDDKALLDKIEPLIKKGYY
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA