| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is pebB
Identifier: 148243161
GI number: 148243161
Start: 1784322
End: 1785110
Strand: Direct
Name: pebB
Synonym: SynRCC307_2062
Alternate gene names: 148243161
Gene position: 1784322-1785110 (Clockwise)
Preceding gene: 148243160
Following gene: 148243162
Centisome position: 80.2
GC content: 60.96
Gene sequence:
>789_bases ATGACCACGCCTCGCCAGAGCAGCCTTGAGCCACTCAGCATCGCCAACTGGCGGTGGCAACCCTTCTTGGATCACGCCTG CGGGGCCCTACAGCCACTGGAGCTTGAGCCTTACCCGGTCGCGCCAGAGTTTCTGCTGCAAACCAGCCAAACCGGTTCCA AGAGCAAACCGGTTCAGGTCACCACAGCCACTTGGGCCTGCAAGACCAACAAGCTTCGTCAAGTGCGGGCGGCCTGCGTG GAAGCCGGCGCAGCGGCTTCGGTGCTGAATTTTGTGGTCAATCCGAGCACCAGCTACGACCTGCCGTTTTTCGGTGCCGA CCTGGTGACCCTGCCAGCTGGTCATCTGCTGGCCCTCGACCTTCAGCCAGCCTTGAAAACAGACGCCGAACACACCAAGG CTGTTTGGGAAAGGCTGATGCCGATTTTCGAGCGCTGGCAACAACGCCTCCCTGGCGGCGGCCCCATCCCCGAAGAAGCG AAGCCCTACTTTTCTCCTGGTTTCCTGTGGACCCGCATCCCCCTGGGAAGCGAGGGCGATGCCCTGATCGAGGAAGCCGT CAAGCCGGCCTTCCGCGACTACCTCGAGCTCTACCTCCAATTGGTGCACGAAGCGGAGGAGGTGAGCCCAGAGCGCAGCG CTGAACTCCTGGCTGGGCAAAAGCGCTACACGAGCTACCGCGCGGAAAAAGATCCCGCCCGCGGCATGTTGACTCGCTTC CACGGAGCGGAATGGACCGAGGCCTACATCCACGGAGTTCTTTTCGATCTTGATAAGAAGTGGATGTAA
Upstream 100 bases:
>100_bases GCGCCGAACGTGATCCCGCTCACGGGCTCTTCACCAGCCATTTCGGCAAGGAGTGGTCCGACCGCTTCCTGCATGAATTT CTGTTCCCAGCGTCTGCTTC
Downstream 100 bases:
>100_bases AGTGCTCTCACAGGCAAAAAACAAGGCCCTGAAAGGCTTGTCAGTGAAACGTGTGAATTAAACATTGTGAACAGGGTTCC AGGGTCTGATAACTCATTGG
Product: phycoerythrobilin:ferredoxin oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MTTPRQSSLEPLSIANWRWQPFLDHACGALQPLELEPYPVAPEFLLQTSQTGSKSKPVQVTTATWACKTNKLRQVRAACV EAGAAASVLNFVVNPSTSYDLPFFGADLVTLPAGHLLALDLQPALKTDAEHTKAVWERLMPIFERWQQRLPGGGPIPEEA KPYFSPGFLWTRIPLGSEGDALIEEAVKPAFRDYLELYLQLVHEAEEVSPERSAELLAGQKRYTSYRAEKDPARGMLTRF HGAEWTEAYIHGVLFDLDKKWM
Sequences:
>Translated_262_residues MTTPRQSSLEPLSIANWRWQPFLDHACGALQPLELEPYPVAPEFLLQTSQTGSKSKPVQVTTATWACKTNKLRQVRAACV EAGAAASVLNFVVNPSTSYDLPFFGADLVTLPAGHLLALDLQPALKTDAEHTKAVWERLMPIFERWQQRLPGGGPIPEEA KPYFSPGFLWTRIPLGSEGDALIEEAVKPAFRDYLELYLQLVHEAEEVSPERSAELLAGQKRYTSYRAEKDPARGMLTRF HGAEWTEAYIHGVLFDLDKKWM >Mature_261_residues TTPRQSSLEPLSIANWRWQPFLDHACGALQPLELEPYPVAPEFLLQTSQTGSKSKPVQVTTATWACKTNKLRQVRAACVE AGAAASVLNFVVNPSTSYDLPFFGADLVTLPAGHLLALDLQPALKTDAEHTKAVWERLMPIFERWQQRLPGGGPIPEEAK PYFSPGFLWTRIPLGSEGDALIEEAVKPAFRDYLELYLQLVHEAEEVSPERSAELLAGQKRYTSYRAEKDPARGMLTRFH GAEWTEAYIHGVLFDLDKKWM
Specific function: Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HY2 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PEBB_SYNR3 (A5GVQ6)
Other databases:
- EMBL: CT978603 - RefSeq: YP_001228318.1 - ProteinModelPortal: A5GVQ6 - SMR: A5GVQ6 - STRING: A5GVQ6 - GeneID: 5157772 - GenomeReviews: CT978603_GR - KEGG: syr:SynRCC307_2062 - eggNOG: NOG40636 - HOGENOM: HBG635096 - OMA: DLPFFGA - ProtClustDB: PRK13249 - HAMAP: MF_00793 - InterPro: IPR009249 - InterPro: IPR022827
Pfam domain/function: PF05996 Fe_bilin_red
EC number: =1.3.7.3
Molecular weight: Translated: 29378; Mature: 29247
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPRQSSLEPLSIANWRWQPFLDHACGALQPLELEPYPVAPEFLLQTSQTGSKSKPVQV CCCCCCCCCCCCEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEE TTATWACKTNKLRQVRAACVEAGAAASVLNFVVNPSTSYDLPFFGADLVTLPAGHLLALD EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCEEEEE LQPALKTDAEHTKAVWERLMPIFERWQQRLPGGGPIPEEAKPYFSPGFLWTRIPLGSEGD CCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCH ALIEEAVKPAFRDYLELYLQLVHEAEEVSPERSAELLAGQKRYTSYRAEKDPARGMLTRF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHH HGAEWTEAYIHGVLFDLDKKWM CCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TTPRQSSLEPLSIANWRWQPFLDHACGALQPLELEPYPVAPEFLLQTSQTGSKSKPVQV CCCCCCCCCCCEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEE TTATWACKTNKLRQVRAACVEAGAAASVLNFVVNPSTSYDLPFFGADLVTLPAGHLLALD EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCEEEEE LQPALKTDAEHTKAVWERLMPIFERWQQRLPGGGPIPEEAKPYFSPGFLWTRIPLGSEGD CCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCH ALIEEAVKPAFRDYLELYLQLVHEAEEVSPERSAELLAGQKRYTSYRAEKDPARGMLTRF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHH HGAEWTEAYIHGVLFDLDKKWM CCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA