Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148243136

Identifier: 148243136

GI number: 148243136

Start: 1765835

End: 1766509

Strand: Direct

Name: 148243136

Synonym: SynRCC307_2037

Alternate gene names: NA

Gene position: 1765835-1766509 (Clockwise)

Preceding gene: 148243135

Following gene: 148243137

Centisome position: 79.37

GC content: 59.7

Gene sequence:

>675_bases
CTGCAGCGGTTAGAGCTCAACAATTGGGCCCCTCCTGAACAGGCTCGTCCAGAGGGATCCTCCATCAGCTCCATTGATGC
GCGTGGTGCGGATTGGAGTGGCATCGATCTGCAAGAGCGCAATCTCGCAGGGGCGCTGTTGTGCCGCTGTGATCTACGCG
GCAGCGATCTCAGCCGCTGCAATTTGGAAGGGGCTGATCTACGCCTTGCTCTCTACGACAGCCAAACCCGTTGGCCAGAG
AGCTTCAATCCAAAGACCAGCGGAGCCATTGGACCTGGCGCCCAGCTCAATGGAATCTTCCTCAACAACGCTGATCTGCG
CGGCATGGATCTGCGCGGTTGCAATTTGATGGGGGCCTACCTCAGCGGCACTGATCTCAGCGGCGCTTGCCTCGATGGCA
TCAGCTTGGCTGCAGCGGATCTACGCAAAGCAGTGTTGCGAGGTACAAGCTGCGTGGGAAGCCGCTTTGGCAGTTGCCAG
CTGGATTTCGCCGATTTCCGGGGGGCTGACCTCACGGACGCAGCCCTCGACACAGCTGAATCTATCCGTGGCGCTGATTT
CAGCGGCAGCCAGGGACTCGGCCCAACCCGGCAAGCCTTGCTCAGCCGTGGCGCTCAAGAATTGGACTGCTGGAATCCTC
TGACGCGATCCAATACCCGCAGCAGTTTGAGCTGA

Upstream 100 bases:

>100_bases
TGGCTGGGACTCTTTGCTACCGGCGGCTTTGAGCTGGTGCGCTTTGTCCTAACCATTGCCGCTGAAATGCTAAAAACGGC
GCAAGGTTGAGGCGTTCGTT

Downstream 100 bases:

>100_bases
TCGCAGGCCTGGACTGACTTCCCGGGGACTGCCAGGAAGTTGAGCTTTATAAACAAACGCCTTGCAACAAGGAGTTGTGG
CCGACCATGCTATGGCGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MQRLELNNWAPPEQARPEGSSISSIDARGADWSGIDLQERNLAGALLCRCDLRGSDLSRCNLEGADLRLALYDSQTRWPE
SFNPKTSGAIGPGAQLNGIFLNNADLRGMDLRGCNLMGAYLSGTDLSGACLDGISLAAADLRKAVLRGTSCVGSRFGSCQ
LDFADFRGADLTDAALDTAESIRGADFSGSQGLGPTRQALLSRGAQELDCWNPLTRSNTRSSLS

Sequences:

>Translated_224_residues
MQRLELNNWAPPEQARPEGSSISSIDARGADWSGIDLQERNLAGALLCRCDLRGSDLSRCNLEGADLRLALYDSQTRWPE
SFNPKTSGAIGPGAQLNGIFLNNADLRGMDLRGCNLMGAYLSGTDLSGACLDGISLAAADLRKAVLRGTSCVGSRFGSCQ
LDFADFRGADLTDAALDTAESIRGADFSGSQGLGPTRQALLSRGAQELDCWNPLTRSNTRSSLS
>Mature_224_residues
MQRLELNNWAPPEQARPEGSSISSIDARGADWSGIDLQERNLAGALLCRCDLRGSDLSRCNLEGADLRLALYDSQTRWPE
SFNPKTSGAIGPGAQLNGIFLNNADLRGMDLRGCNLMGAYLSGTDLSGACLDGISLAAADLRKAVLRGTSCVGSRFGSCQ
LDFADFRGADLTDAALDTAESIRGADFSGSQGLGPTRQALLSRGAQELDCWNPLTRSNTRSSLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 23791; Mature: 23791

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLELNNWAPPEQARPEGSSISSIDARGADWSGIDLQERNLAGALLCRCDLRGSDLSRC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCC
NLEGADLRLALYDSQTRWPESFNPKTSGAIGPGAQLNGIFLNNADLRGMDLRGCNLMGAY
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCCCEEEEEE
LSGTDLSGACLDGISLAAADLRKAVLRGTSCVGSRFGSCQLDFADFRGADLTDAALDTAE
ECCCCCCCHHHCCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEHHHCCCCCCHHHHHHHHH
SIRGADFSGSQGLGPTRQALLSRGAQELDCWNPLTRSNTRSSLS
HHCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQRLELNNWAPPEQARPEGSSISSIDARGADWSGIDLQERNLAGALLCRCDLRGSDLSRC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCC
NLEGADLRLALYDSQTRWPESFNPKTSGAIGPGAQLNGIFLNNADLRGMDLRGCNLMGAY
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCCCEEEEEE
LSGTDLSGACLDGISLAAADLRKAVLRGTSCVGSRFGSCQLDFADFRGADLTDAALDTAE
ECCCCCCCHHHCCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEHHHCCCCCCHHHHHHHHH
SIRGADFSGSQGLGPTRQALLSRGAQELDCWNPLTRSNTRSSLS
HHCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA