| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242848
Identifier: 148242848
GI number: 148242848
Start: 1530952
End: 1531614
Strand: Direct
Name: 148242848
Synonym: SynRCC307_1749
Alternate gene names: NA
Gene position: 1530952-1531614 (Clockwise)
Preceding gene: 148242847
Following gene: 148242849
Centisome position: 68.81
GC content: 64.56
Gene sequence:
>663_bases GTGAGCGCCTACTGCGGCGCCCTGTGGATCGCTGCCCTGGAGGCGGCCCTCGCGATGGGCCAAACCCTGGCTTTGGAGTT GGGGGTCGACACCGCAGCTGAACAGCGCGATTTCAGCCAGTGGCTGCAGCAATCACGGGGCAACTTCGATCAGCTGCTCT GGAACGGCGAGTTTTACAAAATCGATGCCGAGAGCGGCACGCCGGTGGTGATGGCCGATCAGCTCTGCGGCGATTTCTAC GCCCGCCTGCTGGGGCTGCCGCCGGTGGTGAGTGAGGCCAATGCCCGCAGCAGCTTGCAGGCGATCAAAGAGGCCTGCTT TGAGGGCTTTGCCGGTGGCCGCTTGGGCGTCGCCAATGGCTTGCGCCGCGATGGCACCCCGCTCGATCCCAATGGCACCC ACCCGCTGGAGGTGTGGACCGGCATCAACTTCGGTTTGGCCGCCTACTACCGGCTGATGGGCGAGACCAACACAGCGGTG GCCATCACCCAAGCCGTGGTGAATCAGGTCTATGCAGGCGGCCTGCAATTCCGCACCCCAGAAGCCCTCACCGGGCAGAA CACCTTCCGGGCCTGCCACTATCTGCGGGCAATGGCGATTTGGGCACTGTGGGCCACCCATACCGATTGGGAACTGATTC CCGGCGCGGAACGGCAGCCATGA
Upstream 100 bases:
>100_bases GGCCCTGCGCTACCTGAAAACCTTCGACATCAACAACGACGGCCTGCCCGACAACGGCGGAGCGCCGGATCAAACCTTTG ATGATTGGGCGCTCAAAGGC
Downstream 100 bases:
>100_bases GCCGGCTGCTGGCCGCCCTGACGCTGCTGGTGCTGACGCTGCTGCCAGCGGGCCCAGCAGCTGCTGAGCTGCATAGCCAT CCCGGCGACAACGGAACCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MSAYCGALWIAALEAALAMGQTLALELGVDTAAEQRDFSQWLQQSRGNFDQLLWNGEFYKIDAESGTPVVMADQLCGDFY ARLLGLPPVVSEANARSSLQAIKEACFEGFAGGRLGVANGLRRDGTPLDPNGTHPLEVWTGINFGLAAYYRLMGETNTAV AITQAVVNQVYAGGLQFRTPEALTGQNTFRACHYLRAMAIWALWATHTDWELIPGAERQP
Sequences:
>Translated_220_residues MSAYCGALWIAALEAALAMGQTLALELGVDTAAEQRDFSQWLQQSRGNFDQLLWNGEFYKIDAESGTPVVMADQLCGDFY ARLLGLPPVVSEANARSSLQAIKEACFEGFAGGRLGVANGLRRDGTPLDPNGTHPLEVWTGINFGLAAYYRLMGETNTAV AITQAVVNQVYAGGLQFRTPEALTGQNTFRACHYLRAMAIWALWATHTDWELIPGAERQP >Mature_219_residues SAYCGALWIAALEAALAMGQTLALELGVDTAAEQRDFSQWLQQSRGNFDQLLWNGEFYKIDAESGTPVVMADQLCGDFYA RLLGLPPVVSEANARSSLQAIKEACFEGFAGGRLGVANGLRRDGTPLDPNGTHPLEVWTGINFGLAAYYRLMGETNTAVA ITQAVVNQVYAGGLQFRTPEALTGQNTFRACHYLRAMAIWALWATHTDWELIPGAERQP
Specific function: Unknown
COG id: COG4354
COG function: function code G; Predicted bile acid beta-glucosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24308251, Length=207, Percent_Identity=35.2657004830918, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI71992715, Length=227, Percent_Identity=29.5154185022026, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71992723, Length=227, Percent_Identity=29.5154185022026, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71992731, Length=227, Percent_Identity=29.5154185022026, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562976, Length=152, Percent_Identity=32.2368421052632, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI45552032, Length=214, Percent_Identity=30.8411214953271, Blast_Score=108, Evalue=4e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23946; Mature: 23815
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAYCGALWIAALEAALAMGQTLALELGVDTAAEQRDFSQWLQQSRGNFDQLLWNGEFYK CCCHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHHCCCHHHEEECCEEEE IDAESGTPVVMADQLCGDFYARLLGLPPVVSEANARSSLQAIKEACFEGFAGGRLGVANG EECCCCCCEEEHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCC LRRDGTPLDPNGTHPLEVWTGINFGLAAYYRLMGETNTAVAITQAVVNQVYAGGLQFRTP CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC EALTGQNTFRACHYLRAMAIWALWATHTDWELIPGAERQP CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC >Mature Secondary Structure SAYCGALWIAALEAALAMGQTLALELGVDTAAEQRDFSQWLQQSRGNFDQLLWNGEFYK CCHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHHCCCHHHEEECCEEEE IDAESGTPVVMADQLCGDFYARLLGLPPVVSEANARSSLQAIKEACFEGFAGGRLGVANG EECCCCCCEEEHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCC LRRDGTPLDPNGTHPLEVWTGINFGLAAYYRLMGETNTAVAITQAVVNQVYAGGLQFRTP CCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC EALTGQNTFRACHYLRAMAIWALWATHTDWELIPGAERQP CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA