Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148242847

Identifier: 148242847

GI number: 148242847

Start: 1529112

End: 1530932

Strand: Direct

Name: 148242847

Synonym: SynRCC307_1748

Alternate gene names: NA

Gene position: 1529112-1530932 (Clockwise)

Preceding gene: 148242846

Following gene: 148242848

Centisome position: 68.73

GC content: 66.06

Gene sequence:

>1821_bases
ATGGCGCCCTTTGGGCTCTCCAGGCTGCGCTCCCTGTTGCGCCGAGAAGGCCGCCAAGGCCACACCACCCCCACCGCCAG
CTGGAGCCGCCCGTTTGGCCAGGGCTGGGAGTCGCCCTACACCGTTCGCTACGCCAGCAACCTCGATGACGGCCCCTGGC
ATGGGGCGCCTTTAGGCGGCTTTGGCGCCGGTTGCATTGGCCGCAGCTCCAAAGGAGATTTCAACCTCTGGAACATCGAT
GGTGGTGAGCACTGGTTTGGCTCCCTGCCCGATTGCCAGTTCGCCCTCTTTGAAGACAACGGTTCAGACACCCGCGCCCA
TGCCCTGGCGGTGGCGCCCGAGGCCGATAGCTCCAAACCCGAAGGAGAAGCGCCCCTAAGCAGCTGGAGCTGGTATCCGG
CCAGCACAGCTGAGAAGCCCACTGGCAGCTACAGCGCCCGCTATCCCCTGAACTGGTTTCACTACAGCGGCGTTTTTGGC
TGTGAGGCCAGCTGCGAAAGCTTCAGCCCGATCATTCCCGGCAACTACCGCGACACCGCCCTGCCGGTGGCGGTGTTCCG
CTGGCGTTTTCGCAACCCCAGCCGCAAGCCGCTGAAGCTCTCGCTGCTGCTGAGCTGGCGCAACACCACCGGCTGGTTCT
GCAACACCGACCCCAGCGCTGCGGTGCACTTCCGCGACGACGGCAGCCCCGAGCACAACTACCTGCCAGCCATCGGCGCC
ACCCAAGGCCAGCGCAACCGCGCCATCAATGCCCCAGGCCTGCGCGGCGTGGTGATGGAAGGCCCCATGAGCGAACCAAT
CGCTGAAGGCCAAGGCCAGTGGTGCATCGCTGTACCCGAAGAGCTCGAGGGCGTTGAGCTGATGCGCTGCAGCCGCTGGA
ACCCCCATGGCGATGGAGCAGAGATCTGGCAGCGCTTTGCCGCCGATGGCTCGGTGCCGGAGAGCAACAACGACCGGCGC
AGCGGCAACAACGATCCGGTGAGTGCCGCCATGGCTCTGCGCTTTGAGCTCGCCCCTGGCGCTGAGCTTGAACTACCGGT
GGTGATCAGCTGGGATCTGCCCGTCACCGCCTTTGCCACCGGCAGCCAATGCCTCAGGCGCTACACGGATTTCTTTGGCC
CCAGCGGCGATCAAGCCGCCGCCATTGCCGCCGATGCGCTGCTGCGCTGGCCCCGCTGGCGCCAGCAGATCGAGGAATGG
CAAGCGCCCGTGCTGCTGCGCGACGACCTGCCCGAGGAGCTGCGCATGGCCCTCTGCAATGAGCTCTACGACCTGGCCAG
CGGCGGCACGCTGTGGAGCGCGGCGAGCGCCAGTGATCCAGTGGGCCGCTTTGGCGTGCTCGAGTGCCTCGACTACGCCT
GGTACGAAAGCCTCGATGTGCGGCTCTACGGCTCCTTTGCCCTGCTGCAGCTCTGGCCGGCCTTGGATCGCTCGGTGCTG
CGCAGCTTTGCCCGCGCGATCCCCGCAGCCGATGCCACCCAGCGGCCGATTGGTTGGTATTTCACCCAAGGGCGCGGCCG
CGTGGAAGCCGATCGCAAGGTGGCAGGCGCCACCCCCCCACGACCTCGGCGCCCCCAACGAGCAGCCCTGGGATGCCACC
AACTACACCGCCTATCAAGACTGCAACCTCTGGAAAGACCTGGGCAGCGACTTTGTGCTGCAGGTGTGGCGCACCTACCA
GCTCGCTCCCGATGGCAAAGACCTCAGCTTCCTGGCCGACTGCTGGCCAGCCTCGGTGCAGGCCCTGCGCTACCTGAAAA
CCTTCGACATCAACAACGACGGCCTGCCCGACAACGGCGGAGCGCCGGATCAAACCTTTGA

Upstream 100 bases:

>100_bases
GCAGCATGGCGGCCCGCAAGATCGGCGCTGGCTGGGTGCGCAGCAACCCCCTTGTGCGCTAGGGGATTTCCGGCAAGCTG
ACACGAATTCCAACTAACCC

Downstream 100 bases:

>100_bases
TGATTGGGCGCTCAAAGGCGTGAGCGCCTACTGCGGCGCCCTGTGGATCGCTGCCCTGGAGGCGGCCCTCGCGATGGGCC
AAACCCTGGCTTTGGAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 606; Mature: 605

Protein sequence:

>606_residues
MAPFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGGFGAGCIGRSSKGDFNLWNID
GGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKPEGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFG
CEASCESFSPIIPGNYRDTALPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA
TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGAEIWQRFAADGSVPESNNDRR
SGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFATGSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEW
QAPVLLRDDLPEELRMALCNELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL
RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSRLQPLERPGQRLCAAGVAHLP
ARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRRSAGSNL

Sequences:

>Translated_606_residues
MAPFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGGFGAGCIGRSSKGDFNLWNID
GGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKPEGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFG
CEASCESFSPIIPGNYRDTALPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA
TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGAEIWQRFAADGSVPESNNDRR
SGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFATGSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEW
QAPVLLRDDLPEELRMALCNELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL
RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSRLQPLERPGQRLCAAGVAHLP
ARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRRSAGSNL
>Mature_605_residues
APFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGGFGAGCIGRSSKGDFNLWNIDG
GEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKPEGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFGC
EASCESFSPIIPGNYRDTALPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGAT
QGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGAEIWQRFAADGSVPESNNDRRS
GNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFATGSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEWQ
APVLLRDDLPEELRMALCNELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVLR
SFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSRLQPLERPGQRLCAAGVAHLPA
RSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRRSAGSNL

Specific function: Unknown

COG id: COG4354

COG function: function code G; Predicted bile acid beta-glucosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI24308251, Length=474, Percent_Identity=29.1139240506329, Blast_Score=149, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17562976, Length=515, Percent_Identity=24.4660194174757, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71992715, Length=468, Percent_Identity=27.5641025641026, Blast_Score=138, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI71992731, Length=468, Percent_Identity=27.5641025641026, Blast_Score=138, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI71992723, Length=468, Percent_Identity=27.5641025641026, Blast_Score=138, Evalue=8e-33,
Organism=Drosophila melanogaster, GI45552032, Length=441, Percent_Identity=29.2517006802721, Blast_Score=176, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66944; Mature: 66812

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGG
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
FGAGCIGRSSKGDFNLWNIDGGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKP
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC
EGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFGCEASCESFSPIIPGNYRDTA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCH
LPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA
HHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCC
TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGA
CCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCHH
EIWQRFAADGSVPESNNDRRSGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFAT
HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEECC
GSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEWQAPVLLRDDLPEELRMALCN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHHHHHHH
ELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL
HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH
RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSR
HHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQPLERPGQRLCAAGVAHLPARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRR
CCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCHHHHHH
SAGSNL
HCCCCC
>Mature Secondary Structure 
APFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGG
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
FGAGCIGRSSKGDFNLWNIDGGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKP
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC
EGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFGCEASCESFSPIIPGNYRDTA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCH
LPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA
HHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCC
TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGA
CCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCHH
EIWQRFAADGSVPESNNDRRSGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFAT
HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEECC
GSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEWQAPVLLRDDLPEELRMALCN
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHHHHHHH
ELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL
HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH
RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSR
HHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQPLERPGQRLCAAGVAHLPARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRR
CCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCHHHHHH
SAGSNL
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA