| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242847
Identifier: 148242847
GI number: 148242847
Start: 1529112
End: 1530932
Strand: Direct
Name: 148242847
Synonym: SynRCC307_1748
Alternate gene names: NA
Gene position: 1529112-1530932 (Clockwise)
Preceding gene: 148242846
Following gene: 148242848
Centisome position: 68.73
GC content: 66.06
Gene sequence:
>1821_bases ATGGCGCCCTTTGGGCTCTCCAGGCTGCGCTCCCTGTTGCGCCGAGAAGGCCGCCAAGGCCACACCACCCCCACCGCCAG CTGGAGCCGCCCGTTTGGCCAGGGCTGGGAGTCGCCCTACACCGTTCGCTACGCCAGCAACCTCGATGACGGCCCCTGGC ATGGGGCGCCTTTAGGCGGCTTTGGCGCCGGTTGCATTGGCCGCAGCTCCAAAGGAGATTTCAACCTCTGGAACATCGAT GGTGGTGAGCACTGGTTTGGCTCCCTGCCCGATTGCCAGTTCGCCCTCTTTGAAGACAACGGTTCAGACACCCGCGCCCA TGCCCTGGCGGTGGCGCCCGAGGCCGATAGCTCCAAACCCGAAGGAGAAGCGCCCCTAAGCAGCTGGAGCTGGTATCCGG CCAGCACAGCTGAGAAGCCCACTGGCAGCTACAGCGCCCGCTATCCCCTGAACTGGTTTCACTACAGCGGCGTTTTTGGC TGTGAGGCCAGCTGCGAAAGCTTCAGCCCGATCATTCCCGGCAACTACCGCGACACCGCCCTGCCGGTGGCGGTGTTCCG CTGGCGTTTTCGCAACCCCAGCCGCAAGCCGCTGAAGCTCTCGCTGCTGCTGAGCTGGCGCAACACCACCGGCTGGTTCT GCAACACCGACCCCAGCGCTGCGGTGCACTTCCGCGACGACGGCAGCCCCGAGCACAACTACCTGCCAGCCATCGGCGCC ACCCAAGGCCAGCGCAACCGCGCCATCAATGCCCCAGGCCTGCGCGGCGTGGTGATGGAAGGCCCCATGAGCGAACCAAT CGCTGAAGGCCAAGGCCAGTGGTGCATCGCTGTACCCGAAGAGCTCGAGGGCGTTGAGCTGATGCGCTGCAGCCGCTGGA ACCCCCATGGCGATGGAGCAGAGATCTGGCAGCGCTTTGCCGCCGATGGCTCGGTGCCGGAGAGCAACAACGACCGGCGC AGCGGCAACAACGATCCGGTGAGTGCCGCCATGGCTCTGCGCTTTGAGCTCGCCCCTGGCGCTGAGCTTGAACTACCGGT GGTGATCAGCTGGGATCTGCCCGTCACCGCCTTTGCCACCGGCAGCCAATGCCTCAGGCGCTACACGGATTTCTTTGGCC CCAGCGGCGATCAAGCCGCCGCCATTGCCGCCGATGCGCTGCTGCGCTGGCCCCGCTGGCGCCAGCAGATCGAGGAATGG CAAGCGCCCGTGCTGCTGCGCGACGACCTGCCCGAGGAGCTGCGCATGGCCCTCTGCAATGAGCTCTACGACCTGGCCAG CGGCGGCACGCTGTGGAGCGCGGCGAGCGCCAGTGATCCAGTGGGCCGCTTTGGCGTGCTCGAGTGCCTCGACTACGCCT GGTACGAAAGCCTCGATGTGCGGCTCTACGGCTCCTTTGCCCTGCTGCAGCTCTGGCCGGCCTTGGATCGCTCGGTGCTG CGCAGCTTTGCCCGCGCGATCCCCGCAGCCGATGCCACCCAGCGGCCGATTGGTTGGTATTTCACCCAAGGGCGCGGCCG CGTGGAAGCCGATCGCAAGGTGGCAGGCGCCACCCCCCCACGACCTCGGCGCCCCCAACGAGCAGCCCTGGGATGCCACC AACTACACCGCCTATCAAGACTGCAACCTCTGGAAAGACCTGGGCAGCGACTTTGTGCTGCAGGTGTGGCGCACCTACCA GCTCGCTCCCGATGGCAAAGACCTCAGCTTCCTGGCCGACTGCTGGCCAGCCTCGGTGCAGGCCCTGCGCTACCTGAAAA CCTTCGACATCAACAACGACGGCCTGCCCGACAACGGCGGAGCGCCGGATCAAACCTTTGA
Upstream 100 bases:
>100_bases GCAGCATGGCGGCCCGCAAGATCGGCGCTGGCTGGGTGCGCAGCAACCCCCTTGTGCGCTAGGGGATTTCCGGCAAGCTG ACACGAATTCCAACTAACCC
Downstream 100 bases:
>100_bases TGATTGGGCGCTCAAAGGCGTGAGCGCCTACTGCGGCGCCCTGTGGATCGCTGCCCTGGAGGCGGCCCTCGCGATGGGCC AAACCCTGGCTTTGGAGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MAPFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGGFGAGCIGRSSKGDFNLWNID GGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKPEGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFG CEASCESFSPIIPGNYRDTALPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGAEIWQRFAADGSVPESNNDRR SGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFATGSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEW QAPVLLRDDLPEELRMALCNELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSRLQPLERPGQRLCAAGVAHLP ARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRRSAGSNL
Sequences:
>Translated_606_residues MAPFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGGFGAGCIGRSSKGDFNLWNID GGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKPEGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFG CEASCESFSPIIPGNYRDTALPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGAEIWQRFAADGSVPESNNDRR SGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFATGSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEW QAPVLLRDDLPEELRMALCNELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSRLQPLERPGQRLCAAGVAHLP ARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRRSAGSNL >Mature_605_residues APFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGGFGAGCIGRSSKGDFNLWNIDG GEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKPEGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFGC EASCESFSPIIPGNYRDTALPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGAT QGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGAEIWQRFAADGSVPESNNDRRS GNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFATGSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEWQ APVLLRDDLPEELRMALCNELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVLR SFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSRLQPLERPGQRLCAAGVAHLPA RSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRRSAGSNL
Specific function: Unknown
COG id: COG4354
COG function: function code G; Predicted bile acid beta-glucosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24308251, Length=474, Percent_Identity=29.1139240506329, Blast_Score=149, Evalue=1e-35, Organism=Caenorhabditis elegans, GI17562976, Length=515, Percent_Identity=24.4660194174757, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI71992715, Length=468, Percent_Identity=27.5641025641026, Blast_Score=138, Evalue=6e-33, Organism=Caenorhabditis elegans, GI71992731, Length=468, Percent_Identity=27.5641025641026, Blast_Score=138, Evalue=7e-33, Organism=Caenorhabditis elegans, GI71992723, Length=468, Percent_Identity=27.5641025641026, Blast_Score=138, Evalue=8e-33, Organism=Drosophila melanogaster, GI45552032, Length=441, Percent_Identity=29.2517006802721, Blast_Score=176, Evalue=3e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66944; Mature: 66812
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGG CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC FGAGCIGRSSKGDFNLWNIDGGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKP CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC EGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFGCEASCESFSPIIPGNYRDTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCH LPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA HHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCC TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGA CCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCHH EIWQRFAADGSVPESNNDRRSGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFAT HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEECC GSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEWQAPVLLRDDLPEELRMALCN HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHHHHHHH ELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSR HHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LQPLERPGQRLCAAGVAHLPARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRR CCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCHHHHHH SAGSNL HCCCCC >Mature Secondary Structure APFGLSRLRSLLRREGRQGHTTPTASWSRPFGQGWESPYTVRYASNLDDGPWHGAPLGG CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC FGAGCIGRSSKGDFNLWNIDGGEHWFGSLPDCQFALFEDNGSDTRAHALAVAPEADSSKP CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC EGEAPLSSWSWYPASTAEKPTGSYSARYPLNWFHYSGVFGCEASCESFSPIIPGNYRDTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCH LPVAVFRWRFRNPSRKPLKLSLLLSWRNTTGWFCNTDPSAAVHFRDDGSPEHNYLPAIGA HHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCC TQGQRNRAINAPGLRGVVMEGPMSEPIAEGQGQWCIAVPEELEGVELMRCSRWNPHGDGA CCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCHH EIWQRFAADGSVPESNNDRRSGNNDPVSAAMALRFELAPGAELELPVVISWDLPVTAFAT HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEECC GSQCLRRYTDFFGPSGDQAAAIAADALLRWPRWRQQIEEWQAPVLLRDDLPEELRMALCN HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHHHHHHH ELYDLASGGTLWSAASASDPVGRFGVLECLDYAWYESLDVRLYGSFALLQLWPALDRSVL HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH RSFARAIPAADATQRPIGWYFTQGRGRVEADRKVAGATPPRPRRPQRAALGCHQLHRLSR HHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LQPLERPGQRLCAAGVAHLPARSRWQRPQLPGRLLASLGAGPALPENLRHQQRRPARQRR CCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCHHHHHH SAGSNL HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA