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The map label for this gene is yddE [C]

Identifier: 148242314

GI number: 148242314

Start: 1074281

End: 1075117

Strand: Direct

Name: yddE [C]

Synonym: SynRCC307_1215

Alternate gene names: 148242314

Gene position: 1074281-1075117 (Clockwise)

Preceding gene: 148242313

Following gene: 148242315

Centisome position: 48.28

GC content: 59.86

Gene sequence:

>837_bases
ATGACATTGCCCGTGGTTGCTGTTGATGCGTTCAGCGCCGAGCCCCTTGGCGGGAATGGCGCGACGGTGGTGTGGCTTGA
GCAACCAGCCGATCGGCAGTGGATGCAGCAAATGGCTGCCGCGTTCAATCAATCCGAGACCGCCTTTCTATGGCGGCATG
GGGGTCAGTGGTATCTGCGCTGGTTCACGCCGAGCTGTGAAGTGGATCTATGCGGCCATGCCACCTTGGCGACCACCTTG
GCGTTGCATCACTGGAAGCAGCTGCTGATCCATTCACCCCAACACCTACAGACCCGAAGTGGCCCGTTGCGAATTGAACT
GCAGAGTCCAATCTCGGCAGCGATTGATTTGCCCAGCGATGGTTTGAAGCCACGCGGGAAGGACCCATGGATGGCCCCAT
TCCAGCCGCTGCAGCAGTGGACCTCTGATCTTGGCTACGGGGTGCTGTTGCTGGAGCCCACAGCAGATCTCAAGCAGCTC
AATCCCGATGATCCCTGCTGGGCCAGTTCCGTTGAAAAAGCTTGGGTTCTGATGCAGCGATGTAGCGGGCCTAGCGATTA
CCAGCTGCGTTTCTTTGCTCCAGGTCTTGGACTGCGGGAAGACCCTGTGACGGGATCGGCCCATGCCTTGGTGGCCCCCT
GGTGGTGTGAACAGCTCCGTCAAAGCTCGGTGCGTGGATGGCAGCCATCACACCGTCCCGGTGGACTCTGTTGTGAACCA
CTCAGCAGCGGCATGATCCGCCTAACCGGCGATGGGGTCATCCTTTGGGACGGCGACTTGCGCAGCGAACCAGCCCATCC
ATCTGCGGAGCCATGGCTCGCTTTGCATCCCAACTGA

Upstream 100 bases:

>100_bases
GGTCCCTGCCAATCACCGAGAGCGTGGCATTGCTGCTTCAGGGCGCGCTCTCTCCCGCACAAGCTCTTCAGCAACTGATG
CAGCGCGAGCTGCGCTGCGA

Downstream 100 bases:

>100_bases
GTGCGTCGGGGCCTGTGGTGTTGCTGTTGGGGCTTCCACTGCTGATGGGTGGGGCGATCTTGGCTTGGATCGTTCAGGAC
CAGCAGCCCAATTCACAGGC

Product: epimerase, PhzC/PhzF-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTLPVVAVDAFSAEPLGGNGATVVWLEQPADRQWMQQMAAAFNQSETAFLWRHGGQWYLRWFTPSCEVDLCGHATLATTL
ALHHWKQLLIHSPQHLQTRSGPLRIELQSPISAAIDLPSDGLKPRGKDPWMAPFQPLQQWTSDLGYGVLLLEPTADLKQL
NPDDPCWASSVEKAWVLMQRCSGPSDYQLRFFAPGLGLREDPVTGSAHALVAPWWCEQLRQSSVRGWQPSHRPGGLCCEP
LSSGMIRLTGDGVILWDGDLRSEPAHPSAEPWLALHPN

Sequences:

>Translated_278_residues
MTLPVVAVDAFSAEPLGGNGATVVWLEQPADRQWMQQMAAAFNQSETAFLWRHGGQWYLRWFTPSCEVDLCGHATLATTL
ALHHWKQLLIHSPQHLQTRSGPLRIELQSPISAAIDLPSDGLKPRGKDPWMAPFQPLQQWTSDLGYGVLLLEPTADLKQL
NPDDPCWASSVEKAWVLMQRCSGPSDYQLRFFAPGLGLREDPVTGSAHALVAPWWCEQLRQSSVRGWQPSHRPGGLCCEP
LSSGMIRLTGDGVILWDGDLRSEPAHPSAEPWLALHPN
>Mature_277_residues
TLPVVAVDAFSAEPLGGNGATVVWLEQPADRQWMQQMAAAFNQSETAFLWRHGGQWYLRWFTPSCEVDLCGHATLATTLA
LHHWKQLLIHSPQHLQTRSGPLRIELQSPISAAIDLPSDGLKPRGKDPWMAPFQPLQQWTSDLGYGVLLLEPTADLKQLN
PDDPCWASSVEKAWVLMQRCSGPSDYQLRFFAPGLGLREDPVTGSAHALVAPWWCEQLRQSSVRGWQPSHRPGGLCCEPL
SSGMIRLTGDGVILWDGDLRSEPAHPSAEPWLALHPN

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=293, Percent_Identity=31.740614334471, Blast_Score=117, Evalue=8e-27,
Organism=Homo sapiens, GI74316009, Length=259, Percent_Identity=32.4324324324324, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1787737, Length=244, Percent_Identity=28.6885245901639, Blast_Score=89, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=310, Percent_Identity=25.1612903225806, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17542154, Length=310, Percent_Identity=25.1612903225806, Blast_Score=92, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30846; Mature: 30715

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPVVAVDAFSAEPLGGNGATVVWLEQPADRQWMQQMAAAFNQSETAFLWRHGGQWYLR
CCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCEEEEE
WFTPSCEVDLCGHATLATTLALHHWKQLLIHSPQHLQTRSGPLRIELQSPISAAIDLPSD
EECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCEEEEECCCC
GLKPRGKDPWMAPFQPLQQWTSDLGYGVLLLEPTADLKQLNPDDPCWASSVEKAWVLMQR
CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHH
CSGPSDYQLRFFAPGLGLREDPVTGSAHALVAPWWCEQLRQSSVRGWQPSHRPGGLCCEP
CCCCCCCEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCCCEECCC
LSSGMIRLTGDGVILWDGDLRSEPAHPSAEPWLALHPN
CCCCEEEEECCEEEEECCCCCCCCCCCCCCCEEEECCC
>Mature Secondary Structure 
TLPVVAVDAFSAEPLGGNGATVVWLEQPADRQWMQQMAAAFNQSETAFLWRHGGQWYLR
CCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCEEEEE
WFTPSCEVDLCGHATLATTLALHHWKQLLIHSPQHLQTRSGPLRIELQSPISAAIDLPSD
EECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCEEEEECCCC
GLKPRGKDPWMAPFQPLQQWTSDLGYGVLLLEPTADLKQLNPDDPCWASSVEKAWVLMQR
CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHH
CSGPSDYQLRFFAPGLGLREDPVTGSAHALVAPWWCEQLRQSSVRGWQPSHRPGGLCCEP
CCCCCCCEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCCCEECCC
LSSGMIRLTGDGVILWDGDLRSEPAHPSAEPWLALHPN
CCCCEEEEECCEEEEECCCCCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]