Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

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The map label for this gene is 148242315

Identifier: 148242315

GI number: 148242315

Start: 1075045

End: 1076004

Strand: Direct

Name: 148242315

Synonym: SynRCC307_1216

Alternate gene names: NA

Gene position: 1075045-1076004 (Clockwise)

Preceding gene: 148242314

Following gene: 148242316

Centisome position: 48.32

GC content: 62.6

Gene sequence:

>960_bases
TTGGGACGGCGACTTGCGCAGCGAACCAGCCCATCCATCTGCGGAGCCATGGCTCGCTTTGCATCCCAACTGAGTGCGTC
GGGGCCTGTGGTGTTGCTGTTGGGGCTTCCACTGCTGATGGGTGGGGCGATCTTGGCTTGGATCGTTCAGGACCAGCAGC
CCAATTCACAGGCTTTGTCGAAGTCGTTGGTGGATGAACTCCTCGATCAGCAGAGCAGCCATCAGTCAGCAGCTGCGGGA
GCCTCGGCCGCTGCGCAGGAGTTGGCCGTTCCCCCCTTGGGAGCCCAGCCTGCGTTAGCCATTCGTGTGATGCTCCATCA
CGCTTCAGGCCCGGTGTCGATTCACCATGGAGAGCGCTCCGAGACGCTGAACTGCCGAGGCGGTCAACTCACCGGGGCTC
CACAGCCCTTGGGATCTGGGCGTTGGTTCCAGGCGGTTGCTGGCGAGCCTGTTGGCCTGAATCAACAGCGTTACCGCGGA
GGTGTGCAGGTGCTCTGCCAGGGCAACAAGCTCTTGGTGGTGAATCATGTGCCCTTAGAGGACTACATCAGCTCGGTGGT
GGGCGCTGAGATGCCCAGCCACTGGCCAGCTGAAGCCTTAAGGGCGCAGGCGGTTGCAGCCCGTTCTTACGCCATGGCTC
ACCTGGCCAGACCAGCCAGCCAGGCCTGGAATCTTGGGGCCACCACCCGCTGGCAGGCCTATGGGGGACTGGGCACGGAA
AGCAAGAGCAGCCGCGCGGCGGCGGCTGACACGCAAGGGCTGATTCTGAGTTTTGAGGGCGGCATTGTGGAAAGCCTCTA
CGCCGCTGACCGGCAACTCACCGTGGAAGCCCATGGCCATCTCGGGGCCAGCATGAGCCAACAGGGGGCCCGAAACTTGG
CGGACAAGGGTTACCAATTCACGCAAATTCTCTCCAAGTACTACCCCGGTGCGAGCCTGGCGAGGTTGCAACGCTCGTGA

Upstream 100 bases:

>100_bases
GCTCGGTGCGTGGATGGCAGCCATCACACCGTCCCGGTGGACTCTGTTGTGAACCACTCAGCAGCGGCATGATCCGCCTA
ACCGGCGATGGGGTCATCCT

Downstream 100 bases:

>100_bases
GAGCTGCCATGCACGACCTGCCCAATCGGTCTTTGGCGGTTCAACGCTCTGCGTTGCAATCCGGGGCGTTGATCCCGTTA
AAGACGGAATTGATCTCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: H-34 [H]

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MGRRLAQRTSPSICGAMARFASQLSASGPVVLLLGLPLLMGGAILAWIVQDQQPNSQALSKSLVDELLDQQSSHQSAAAG
ASAAAQELAVPPLGAQPALAIRVMLHHASGPVSIHHGERSETLNCRGGQLTGAPQPLGSGRWFQAVAGEPVGLNQQRYRG
GVQVLCQGNKLLVVNHVPLEDYISSVVGAEMPSHWPAEALRAQAVAARSYAMAHLARPASQAWNLGATTRWQAYGGLGTE
SKSSRAAAADTQGLILSFEGGIVESLYAADRQLTVEAHGHLGASMSQQGARNLADKGYQFTQILSKYYPGASLARLQRS

Sequences:

>Translated_319_residues
MGRRLAQRTSPSICGAMARFASQLSASGPVVLLLGLPLLMGGAILAWIVQDQQPNSQALSKSLVDELLDQQSSHQSAAAG
ASAAAQELAVPPLGAQPALAIRVMLHHASGPVSIHHGERSETLNCRGGQLTGAPQPLGSGRWFQAVAGEPVGLNQQRYRG
GVQVLCQGNKLLVVNHVPLEDYISSVVGAEMPSHWPAEALRAQAVAARSYAMAHLARPASQAWNLGATTRWQAYGGLGTE
SKSSRAAAADTQGLILSFEGGIVESLYAADRQLTVEAHGHLGASMSQQGARNLADKGYQFTQILSKYYPGASLARLQRS
>Mature_318_residues
GRRLAQRTSPSICGAMARFASQLSASGPVVLLLGLPLLMGGAILAWIVQDQQPNSQALSKSLVDELLDQQSSHQSAAAGA
SAAAQELAVPPLGAQPALAIRVMLHHASGPVSIHHGERSETLNCRGGQLTGAPQPLGSGRWFQAVAGEPVGLNQQRYRGG
VQVLCQGNKLLVVNHVPLEDYISSVVGAEMPSHWPAEALRAQAVAARSYAMAHLARPASQAWNLGATTRWQAYGGLGTES
KSSRAAAADTQGLILSFEGGIVESLYAADRQLTVEAHGHLGASMSQQGARNLADKGYQFTQILSKYYPGASLARLQRS

Specific function: Might be involved in sporulation [H]

COG id: COG2385

COG function: function code D; Sporulation protein and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013486
- InterPro:   IPR013693 [H]

Pfam domain/function: PF08486 SpoIID [H]

EC number: NA

Molecular weight: Translated: 33523; Mature: 33392

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRLAQRTSPSICGAMARFASQLSASGPVVLLLGLPLLMGGAILAWIVQDQQPNSQALS
CCCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHEECCCCCCHHHHH
KSLVDELLDQQSSHQSAAAGASAAAQELAVPPLGAQPALAIRVMLHHASGPVSIHHGERS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC
ETLNCRGGQLTGAPQPLGSGRWFQAVAGEPVGLNQQRYRGGVQVLCQGNKLLVVNHVPLE
CEECCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCHHHHCCCEEEEECCCEEEEEECCCHH
DYISSVVGAEMPSHWPAEALRAQAVAARSYAMAHLARPASQAWNLGATTRWQAYGGLGTE
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEHCCCCCCCC
SKSSRAAAADTQGLILSFEGGIVESLYAADRQLTVEAHGHLGASMSQQGARNLADKGYQF
CCCCCCHHCCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHH
TQILSKYYPGASLARLQRS
HHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
GRRLAQRTSPSICGAMARFASQLSASGPVVLLLGLPLLMGGAILAWIVQDQQPNSQALS
CCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHEECCCCCCHHHHH
KSLVDELLDQQSSHQSAAAGASAAAQELAVPPLGAQPALAIRVMLHHASGPVSIHHGERS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC
ETLNCRGGQLTGAPQPLGSGRWFQAVAGEPVGLNQQRYRGGVQVLCQGNKLLVVNHVPLE
CEECCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCHHHHCCCEEEEECCCEEEEEECCCHH
DYISSVVGAEMPSHWPAEALRAQAVAARSYAMAHLARPASQAWNLGATTRWQAYGGLGTE
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEHCCCCCCCC
SKSSRAAAADTQGLILSFEGGIVESLYAADRQLTVEAHGHLGASMSQQGARNLADKGYQF
CCCCCCHHCCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHH
TQILSKYYPGASLARLQRS
HHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA