| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is rtpR [H]
Identifier: 148242053
GI number: 148242053
Start: 875216
End: 877591
Strand: Direct
Name: rtpR [H]
Synonym: SynRCC307_0954
Alternate gene names: 148242053
Gene position: 875216-877591 (Clockwise)
Preceding gene: 148242051
Following gene: 148242059
Centisome position: 39.34
GC content: 60.23
Gene sequence:
>2376_bases ATGGGCTACCGCTTCCTGTGGGGTTTCCGCTTCCCTCTGCCTACTAGATCTAGTGTCGTGACCCCAGCTGAACTGCTTGT GCCACCGGAATCCTCAATGCTGCAGGGGGATTTCCCTGCGACAGCGCCTGCGGCGAACCCGGTCTTCTATCGCACCTATA GCCGTAAAACCGCCACCGGCCGGGAGAGCTGGAAGCAAGTGGTTGAGCGCAACTTGGCCGGCCTCAAGAGCCTGGGCCAG CTGAATGACGATGAGATCGATCTGATGCGCCGCATGCAGTTGCGGCAAGCCTCACTGCCCTCGGGGCGTTGGCTGTGGAT TGGTGGAACTCCTTGGATTGAGAAGCAAGAGAATTTTTCTGGCGCCTACAACTGCACCTCCACCAACCTCGTGGATTGGG AAGCCTTTGGTCTGATGATGGACCTGGCGATGATGGGTTGCGGTACTGGCGCCATCATTGAGCCCCACCTGGTGGAACGT CTGCCAGTCGTGCGCAATGAGCTGCGCGTCTTGAGCGTTAGCAACATCGGCGCGACCCCCGCTGCTGAGCGCCAAGAGTC CACCTCCCACAGCATCGAAGGTCACAAAGTTCAGATCAAGGTCGGCGACACCCGCCGCGGTTGGGTGGATAGCTATCAGC TGTTGCTTGATCTCAGCAGCGATGAGCGTTTCAGCGGCCCCGTTGAAATTGAGGTTGACCTCTCCGATGTGCGCCCGGTT GGTGAAACCCTCAAGGGCTTTGGTGGCATGGCCAACCCGGTCAAGCTCAAAGATCTCTATGGCCGGGTGGCCCAGATCCT CAACAACGCCCGTGGCCGCCAGCTCACCTCGGTCGAGTGCTGCCTGCTGATTGATGAGGCCGCTGTGACGATCGTTGCCG GCAACATTCGCCGCAGCGCTGGTATGCGGCAGTTCGCTTCAGCAGACACCGCTGCTGCAGGTGCCAAAGAAAACCTTTGG CAGCAGGACAGCGATGGCAACTGGCGTATCGATCCTGAGCGCGATGCCCTGCGCATGGCCAATCACACCCGCGTCTTCCA CACGCGCCCCAGCCTTGAGGTGGTGCAAGAGGCGGTCACCAAGCAGTTCCATTCCGGTGAGGGTGCAATTCAATTCGCTC CTGAGGCGATTGCTCGCTCCAACGCCGATCTGCTCACCACCGCTGAACTGCGTCAGGAATTCCAGGAGATCTATTGCGAG CAGGGCCGCCAGGAAGCCGGCCGCTGGCTGCAGCTCAACCACCCGGAGATCACTGAGGCTGAGTTGGAGCACCGTTTAGG TCGCTATGGCCTCAACCCCTGCGGTGAAATCCTCGGCGCTGATTTCCACTGCAACCTGGCAGAGGTTCATCTCAACCGCC TGGACCCCGACGATCTGGAAGGTCAAAGCGATGCTTTCCGCGCCGCGGGCCTCTCGGTGGCTTGCCTGTTGAACCACCGC TTTGAGGTGGAGCGTTATCGCCAGAGCCGCGCTTGGGACCCCATCGTTGGTGTGAGCTTCACCGGCCTGTTCGACTTCTT CGTGCATGCCTTTGGCACCCCTTGGTTGGAGTGGTGGGCTGCTGGCCGCCCCGAAACAGCAGAAGGCTTGGCGTTCAAAG AACAGGAAGCTGCCTTCTTGGCTCGCTGGAAGACCACCGTCAATGAGGCGGTGTGGGATTACTGCGATCGCCATGGGCTG CGTCGTCCCAACCGCTGCACCACGGTTCAACCGGCTGGCACCAAGAGCCTGCTAACCGGCGCAGCCCCCGGCTGGCATCC CCCCAAAGCTCAGCGCTTCATCCGCCGCATCACGTTCCGCAAGAACGACCCCGTGGCGTTGGCTTGCATGGACTACGGCT ACTCCATCGTGCCGTCCCAGTCCGATAAGGATGAGCAGGGCCGCCTTCTCGATGATCCGTTCGATCCCCGTTGCACCGAA TGGTTGGTGGAGATCCCCACTGAAGTGAGCTGGGCCAACCTTCCTGGCGCTGATCAGGTGGAGATCAACAACTTCTCCGC AATGGCTCAGTTCGACTTCTACATGCAGGTGCAGCAGCACTACACGGCGCACAACACCTCAGCCACAATCGAATTCCGTG AGAATGAGATTGAGCCTCTGGCTGAAGCCATCCACGCCTCTATTGGCGAAGGCAAGGGCTACATCTCTGCGGCTCTTTTG GCTCGTTTCGATGCCAATGCCACCTTCCCCCGGCTGCCGTTTGAGCCCATCAACCAGGCTGGCTACGAAGAGCTGCAGGC TGAGGTGGTCAAGCGCCGCAGCACCAGCGACTTCTTTGAGGCGTTGCAGCGTTACGACCAAGGCGAACTGGTGGAAGCCG GTCCAGCTGGTTGTGACTCCGACAAGTGCCTGTTGCCGCTGGCCAAGCAGGGCTAA
Upstream 100 bases:
>100_bases GTCTTGAAGCGCGCCATCACGGCCAGAGCTTGTTGTTGCTGGGCTAGCCACAGCCATCGCAAGCCGTTGCTGGTAATGGC CAGATCAGCGGCCGTCATCC
Downstream 100 bases:
>100_bases GTCCCGCTTTGCTCCATCAAGGTCAGCGTGTCGAGCGCGCTGACCAGTTGCTGCAGGAGTTCATTGCAGCGATTGCATTG ATGTTCTGGACAGGCAGAGT
Product: ribonucleotide reductase
Products: NA
Alternate protein names: RTPR [H]
Number of amino acids: Translated: 791; Mature: 790
Protein sequence:
>791_residues MGYRFLWGFRFPLPTRSSVVTPAELLVPPESSMLQGDFPATAPAANPVFYRTYSRKTATGRESWKQVVERNLAGLKSLGQ LNDDEIDLMRRMQLRQASLPSGRWLWIGGTPWIEKQENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAIIEPHLVER LPVVRNELRVLSVSNIGATPAAERQESTSHSIEGHKVQIKVGDTRRGWVDSYQLLLDLSSDERFSGPVEIEVDLSDVRPV GETLKGFGGMANPVKLKDLYGRVAQILNNARGRQLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFASADTAAAGAKENLW QQDSDGNWRIDPERDALRMANHTRVFHTRPSLEVVQEAVTKQFHSGEGAIQFAPEAIARSNADLLTTAELRQEFQEIYCE QGRQEAGRWLQLNHPEITEAELEHRLGRYGLNPCGEILGADFHCNLAEVHLNRLDPDDLEGQSDAFRAAGLSVACLLNHR FEVERYRQSRAWDPIVGVSFTGLFDFFVHAFGTPWLEWWAAGRPETAEGLAFKEQEAAFLARWKTTVNEAVWDYCDRHGL RRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVALACMDYGYSIVPSQSDKDEQGRLLDDPFDPRCTE WLVEIPTEVSWANLPGADQVEINNFSAMAQFDFYMQVQQHYTAHNTSATIEFRENEIEPLAEAIHASIGEGKGYISAALL ARFDANATFPRLPFEPINQAGYEELQAEVVKRRSTSDFFEALQRYDQGELVEAGPAGCDSDKCLLPLAKQG
Sequences:
>Translated_791_residues MGYRFLWGFRFPLPTRSSVVTPAELLVPPESSMLQGDFPATAPAANPVFYRTYSRKTATGRESWKQVVERNLAGLKSLGQ LNDDEIDLMRRMQLRQASLPSGRWLWIGGTPWIEKQENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAIIEPHLVER LPVVRNELRVLSVSNIGATPAAERQESTSHSIEGHKVQIKVGDTRRGWVDSYQLLLDLSSDERFSGPVEIEVDLSDVRPV GETLKGFGGMANPVKLKDLYGRVAQILNNARGRQLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFASADTAAAGAKENLW QQDSDGNWRIDPERDALRMANHTRVFHTRPSLEVVQEAVTKQFHSGEGAIQFAPEAIARSNADLLTTAELRQEFQEIYCE QGRQEAGRWLQLNHPEITEAELEHRLGRYGLNPCGEILGADFHCNLAEVHLNRLDPDDLEGQSDAFRAAGLSVACLLNHR FEVERYRQSRAWDPIVGVSFTGLFDFFVHAFGTPWLEWWAAGRPETAEGLAFKEQEAAFLARWKTTVNEAVWDYCDRHGL RRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVALACMDYGYSIVPSQSDKDEQGRLLDDPFDPRCTE WLVEIPTEVSWANLPGADQVEINNFSAMAQFDFYMQVQQHYTAHNTSATIEFRENEIEPLAEAIHASIGEGKGYISAALL ARFDANATFPRLPFEPINQAGYEELQAEVVKRRSTSDFFEALQRYDQGELVEAGPAGCDSDKCLLPLAKQG >Mature_790_residues GYRFLWGFRFPLPTRSSVVTPAELLVPPESSMLQGDFPATAPAANPVFYRTYSRKTATGRESWKQVVERNLAGLKSLGQL NDDEIDLMRRMQLRQASLPSGRWLWIGGTPWIEKQENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAIIEPHLVERL PVVRNELRVLSVSNIGATPAAERQESTSHSIEGHKVQIKVGDTRRGWVDSYQLLLDLSSDERFSGPVEIEVDLSDVRPVG ETLKGFGGMANPVKLKDLYGRVAQILNNARGRQLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFASADTAAAGAKENLWQ QDSDGNWRIDPERDALRMANHTRVFHTRPSLEVVQEAVTKQFHSGEGAIQFAPEAIARSNADLLTTAELRQEFQEIYCEQ GRQEAGRWLQLNHPEITEAELEHRLGRYGLNPCGEILGADFHCNLAEVHLNRLDPDDLEGQSDAFRAAGLSVACLLNHRF EVERYRQSRAWDPIVGVSFTGLFDFFVHAFGTPWLEWWAAGRPETAEGLAFKEQEAAFLARWKTTVNEAVWDYCDRHGLR RPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVALACMDYGYSIVPSQSDKDEQGRLLDDPFDPRCTEW LVEIPTEVSWANLPGADQVEINNFSAMAQFDFYMQVQQHYTAHNTSATIEFRENEIEPLAEAIHASIGEGKGYISAALLA RFDANATFPRLPFEPINQAGYEELQAEVVKRRSTSDFFEALQRYDQGELVEAGPAGCDSDKCLLPLAKQG
Specific function: Unknown
COG id: COG1372
COG function: function code L; Intein/homing endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class II ribonucleoside-triphosphate reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000788 - InterPro: IPR013345 [H]
Pfam domain/function: PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 88457; Mature: 88326
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYRFLWGFRFPLPTRSSVVTPAELLVPPESSMLQGDFPATAPAANPVFYRTYSRKTATG CCCEEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC RESWKQVVERNLAGLKSLGQLNDDEIDLMRRMQLRQASLPSGRWLWIGGTPWIEKQENFS HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC GAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAIIEPHLVERLPVVRNELRVLSVSNIGATP CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCEEEEEECCCCCCC AAERQESTSHSIEGHKVQIKVGDTRRGWVDSYQLLLDLSSDERFSGPVEIEVDLSDVRPV CHHHHHCCCCCCCCCEEEEEECCCCCCHHHHEEEEEECCCCCCCCCCEEEEEEHHHCCHH GETLKGFGGMANPVKLKDLYGRVAQILNNARGRQLTSVECCLLIDEAAVTIVAGNIRRSA HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCEEEEEEECCCEEEEEECCHHHHH GMRQFASADTAAAGAKENLWQQDSDGNWRIDPERDALRMANHTRVFHTRPSLEVVQEAVT HHHHHHCCCHHHCCCHHHHCCCCCCCCEEECCCHHHHHHHCCCEEEECCCCHHHHHHHHH KQFHSGEGAIQFAPEAIARSNADLLTTAELRQEFQEIYCEQGRQEAGRWLQLNHPEITEA HHHHCCCCCEEECCHHHHCCCCCCEEHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCHH ELEHRLGRYGLNPCGEILGADFHCNLAEVHLNRLDPDDLEGQSDAFRAAGLSVACLLNHR HHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEHHCC FEVERYRQSRAWDPIVGVSFTGLFDFFVHAFGTPWLEWWAAGRPETAEGLAFKEQEAAFL HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEECHHHHHHH ARWKTTVNEAVWDYCDRHGLRRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFR HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHCC KNDPVALACMDYGYSIVPSQSDKDEQGRLLDDPFDPRCTEWLVEIPTEVSWANLPGADQV CCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEE EINNFSAMAQFDFYMQVQQHYTAHNTSATIEFRENEIEPLAEAIHASIGEGKGYISAALL EECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHH ARFDANATFPRLPFEPINQAGYEELQAEVVKRRSTSDFFEALQRYDQGELVEAGPAGCDS HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCCCCC DKCLLPLAKQG CCEECCCCCCC >Mature Secondary Structure GYRFLWGFRFPLPTRSSVVTPAELLVPPESSMLQGDFPATAPAANPVFYRTYSRKTATG CCEEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC RESWKQVVERNLAGLKSLGQLNDDEIDLMRRMQLRQASLPSGRWLWIGGTPWIEKQENFS HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC GAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAIIEPHLVERLPVVRNELRVLSVSNIGATP CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCEEEEEECCCCCCC AAERQESTSHSIEGHKVQIKVGDTRRGWVDSYQLLLDLSSDERFSGPVEIEVDLSDVRPV CHHHHHCCCCCCCCCEEEEEECCCCCCHHHHEEEEEECCCCCCCCCCEEEEEEHHHCCHH GETLKGFGGMANPVKLKDLYGRVAQILNNARGRQLTSVECCLLIDEAAVTIVAGNIRRSA HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCEEEEEEECCCEEEEEECCHHHHH GMRQFASADTAAAGAKENLWQQDSDGNWRIDPERDALRMANHTRVFHTRPSLEVVQEAVT HHHHHHCCCHHHCCCHHHHCCCCCCCCEEECCCHHHHHHHCCCEEEECCCCHHHHHHHHH KQFHSGEGAIQFAPEAIARSNADLLTTAELRQEFQEIYCEQGRQEAGRWLQLNHPEITEA HHHHCCCCCEEECCHHHHCCCCCCEEHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCHH ELEHRLGRYGLNPCGEILGADFHCNLAEVHLNRLDPDDLEGQSDAFRAAGLSVACLLNHR HHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEHHCC FEVERYRQSRAWDPIVGVSFTGLFDFFVHAFGTPWLEWWAAGRPETAEGLAFKEQEAAFL HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCEECHHHHHHH ARWKTTVNEAVWDYCDRHGLRRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFR HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHCC KNDPVALACMDYGYSIVPSQSDKDEQGRLLDDPFDPRCTEWLVEIPTEVSWANLPGADQV CCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEE EINNFSAMAQFDFYMQVQQHYTAHNTSATIEFRENEIEPLAEAIHASIGEGKGYISAALL EECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHH ARFDANATFPRLPFEPINQAGYEELQAEVVKRRSTSDFFEALQRYDQGELVEAGPAGCDS HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCCCCC DKCLLPLAKQG CCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA