| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is 148241763
Identifier: 148241763
GI number: 148241763
Start: 603168
End: 604070
Strand: Direct
Name: 148241763
Synonym: SynRCC307_0664
Alternate gene names: NA
Gene position: 603168-604070 (Clockwise)
Preceding gene: 148241762
Following gene: 148241766
Centisome position: 27.11
GC content: 68.22
Gene sequence:
>903_bases ATGAGACAGCGGCTGACCCGGCGCCATTGGATGCTGTTGGCGGGCAGTGGCTTGCTGGCAGCCTGCTCCGGCACGAGCCA GAAGCTGGTGGTGCAACAGGGCCTAGTGCCTTCCGCATGGCTGCGGCGTTTGCCGCGCAGTTGGCGGGCGGAATCCCTCG ATTGGCGCCAGAGCTTGCCGGCTTGGCCCAGCGGCAGCCGTTGCCTGGCCCTTACCGATGGCTGGGCGATGGCCAACCAG CCGCTGGCTGCGCAGGCTTGGCCGCAAGAGGCCCTTGATGGGCTGTTGCCTTTGGCCCAACCCCTGCTGCCCTTTGGCCT GCCCGTGGGGTTTGGCCCTTGGCTGTTGGTGCTGCGCAACCGCCGCGATCTGCTTGCCGGCGGCGGGGCGGAGCGGGGCT GGTCATTGCTGCTGGATCCCAGCCTGCGTCAGCAAGTGGTGTTGCCCGCCAGCGCGCGCGTGGTGGAAGAGATTGCCAGG CGCATTGGTGATCCGGCTGAGAGCCTGGCCCGTTTGCGTCAGCAGGCCCTGGGCTTTGGTGATCACGATGCGCTCACCCT GCTGCTGCATGGCGATGCTCAAGCGGCCGTCTTGCCAAGCCGCGCGGTGATTCCCCAGCTCAGCCGCGACACCCGCTTGC AGGCGCTGCTGCCAGAGAGTGGTGCTCCGCTGTGGTGGGCTCTGCTGCAACAAACGGCCCAGGGGGAGGCACCGCCGGTG GAGTGGCTGCTGAACCCGCGCCGTTCACCGCTGCTGGATCAATTGCTGCGCGCTGGATTCACGCCGCCGCTGGACAGGCC AAGGCTGCAGGCCGCCTTGGCCCGCCAACCCCACGCCGAGCTGCTGCTGCCACCCGCTGAGGTGTTGCAGCGCTGCACCA GCCTGTTGCCCTTAGCCCCATAG
Upstream 100 bases:
>100_bases CTGGCGGGCTGGCCTGGTTGACGCAGTTGGCGGGCCTGGACCCGCAGGCCCTCGCTGCCGCCTGTGATCAGGCCTGCGGG CAGCTGCTTAAGGTCGAGCC
Downstream 100 bases:
>100_bases CCGGCGCCGCGGGGGTGAGGCCAGGCGCTGGTGGGTGTCAGCCAGCAGCTCGGGGATGGCCAGGTGATGGGGGCAGCGGG GCAGGCAGTCGCCGCATTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MRQRLTRRHWMLLAGSGLLAACSGTSQKLVVQQGLVPSAWLRRLPRSWRAESLDWRQSLPAWPSGSRCLALTDGWAMANQ PLAAQAWPQEALDGLLPLAQPLLPFGLPVGFGPWLLVLRNRRDLLAGGGAERGWSLLLDPSLRQQVVLPASARVVEEIAR RIGDPAESLARLRQQALGFGDHDALTLLLHGDAQAAVLPSRAVIPQLSRDTRLQALLPESGAPLWWALLQQTAQGEAPPV EWLLNPRRSPLLDQLLRAGFTPPLDRPRLQAALARQPHAELLLPPAEVLQRCTSLLPLAP
Sequences:
>Translated_300_residues MRQRLTRRHWMLLAGSGLLAACSGTSQKLVVQQGLVPSAWLRRLPRSWRAESLDWRQSLPAWPSGSRCLALTDGWAMANQ PLAAQAWPQEALDGLLPLAQPLLPFGLPVGFGPWLLVLRNRRDLLAGGGAERGWSLLLDPSLRQQVVLPASARVVEEIAR RIGDPAESLARLRQQALGFGDHDALTLLLHGDAQAAVLPSRAVIPQLSRDTRLQALLPESGAPLWWALLQQTAQGEAPPV EWLLNPRRSPLLDQLLRAGFTPPLDRPRLQAALARQPHAELLLPPAEVLQRCTSLLPLAP >Mature_300_residues MRQRLTRRHWMLLAGSGLLAACSGTSQKLVVQQGLVPSAWLRRLPRSWRAESLDWRQSLPAWPSGSRCLALTDGWAMANQ PLAAQAWPQEALDGLLPLAQPLLPFGLPVGFGPWLLVLRNRRDLLAGGGAERGWSLLLDPSLRQQVVLPASARVVEEIAR RIGDPAESLARLRQQALGFGDHDALTLLLHGDAQAAVLPSRAVIPQLSRDTRLQALLPESGAPLWWALLQQTAQGEAPPV EWLLNPRRSPLLDQLLRAGFTPPLDRPRLQAALARQPHAELLLPPAEVLQRCTSLLPLAP
Specific function: Unknown
COG id: COG0687
COG function: function code E; Spermidine/putrescine-binding periplasmic protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32902; Mature: 32902
Theoretical pI: Translated: 11.57; Mature: 11.57
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQRLTRRHWMLLAGSGLLAACSGTSQKLVVQQGLVPSAWLRRLPRSWRAESLDWRQSLP CCCHHHHHHEEEEECCCEEEECCCCCHHHHHHHCCCCHHHHHHCCHHHCCCCCCHHHCCC AWPSGSRCLALTDGWAMANQPLAAQAWPQEALDGLLPLAQPLLPFGLPVGFGPWLLVLRN CCCCCCEEEEEECCCHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC RRDLLAGGGAERGWSLLLDPSLRQQVVLPASARVVEEIARRIGDPAESLARLRQQALGFG CHHHHCCCCCCCCCEEEECCCCCCEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC DHDALTLLLHGDAQAAVLPSRAVIPQLSRDTRLQALLPESGAPLWWALLQQTAQGEAPPV CCCEEEEEEECCCCEEECCCHHHCCCCCCCCHHHEECCCCCCHHHHHHHHHHHCCCCCCH EWLLNPRRSPLLDQLLRAGFTPPLDRPRLQAALARQPHAELLLPPAEVLQRCTSLLPLAP HHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHEECCHHHHHHHHHHHCCCCC >Mature Secondary Structure MRQRLTRRHWMLLAGSGLLAACSGTSQKLVVQQGLVPSAWLRRLPRSWRAESLDWRQSLP CCCHHHHHHEEEEECCCEEEECCCCCHHHHHHHCCCCHHHHHHCCHHHCCCCCCHHHCCC AWPSGSRCLALTDGWAMANQPLAAQAWPQEALDGLLPLAQPLLPFGLPVGFGPWLLVLRN CCCCCCEEEEEECCCHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC RRDLLAGGGAERGWSLLLDPSLRQQVVLPASARVVEEIARRIGDPAESLARLRQQALGFG CHHHHCCCCCCCCCEEEECCCCCCEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC DHDALTLLLHGDAQAAVLPSRAVIPQLSRDTRLQALLPESGAPLWWALLQQTAQGEAPPV CCCEEEEEEECCCCEEECCCHHHCCCCCCCCHHHEECCCCCCHHHHHHHHHHHCCCCCCH EWLLNPRRSPLLDQLLRAGFTPPLDRPRLQAALARQPHAELLLPPAEVLQRCTSLLPLAP HHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHEECCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA