| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241762
Identifier: 148241762
GI number: 148241762
Start: 602047
End: 603171
Strand: Direct
Name: 148241762
Synonym: SynRCC307_0663
Alternate gene names: NA
Gene position: 602047-603171 (Clockwise)
Preceding gene: 148241761
Following gene: 148241763
Centisome position: 27.06
GC content: 68.36
Gene sequence:
>1125_bases TTGACCCTTCCTGATCTCTGGCGAGCTCGGGCTCAAGCAGCGCTGCAAAGCAACCAGAGCCAGCTGTTGCTGGTGCTTGC TGGCACGCAAACCGCAGCTGTGCCTGGGATTTCAGCGGCTGGTGCCACACCCGATAGCCGCCGATTCACCGCTGCTGCCG ATGCCGAATTGCTGTGGGGCGGCCCCGATGGCCCCAGGCCCCATGCCTTGCCGCCCCTGCCAGCTGGCGTCAGCCCGGCG TTGATCAGTTGGGTGGCGCAGCAGCAGCTGCGCTTGCCGCTGGTGGTGGCTGATGCCGGAGCCTTCGTGGCCCCAGCGGT GCCCCATGTGCAGTTGGGGCTGCCGCCAGCGGCTTGCCTCAGTAGCGGGGCTGCCATGGCTCCAGCGGTGGTGGAGCGGT TGTTGCAGCGCGGCCGCCAGTTGGGCCTTGGCTTTCGCCAGCGCTTCCCTGAGGGATTACTCGTGCTCGCTGAGTGCGTG CCAGGCGGCACCAGCACCGCTGAAGCCCTGTTGCGCGGCTTGGGTGTCGATGCCGCTGGGTTGGTGAGCGGCAGCTTGCG GCAGCCGCCCCACAGCCTGCGTGGCGCCTTGGTGCAGCAGGGGCTCGATGCGATGACAGCCCGCGGCATCAGCTCTGAGG AGCCATTGGAGGTGGTGGCTGCGGTGGGTGATCCCTTTCAAGCCATGGCCTTGGGGGTGTTGCAGGGCCTGTTGCTGCCG GCTGAGGGCCCAGGGCCCCAGGCTCTGCTCGCCGGCGGCAGCCAGATGCTGGCGCTGGCGGGGCTGTGGATGGCCAGCCT CAGCGAAGCCGAGCGGGCGGCCTGCCACCAGCAGCTGGCTGTGGTCACCACCTCCTGGGTGATGCAGGAACCAGGGAGCA ACCTCGAGCTGCTGGCCCAGCGTTTGGCTGCGGTGTGGGGCGTGCAGCCGCCTCTGTTCAGCAGCGCGTTGCGCTTCGAT GGCTGCCAGCAGCAGGCGCTGCTCGATTACGAATGTGGCTACGTCAAAGAGGGAGTGGGCGCTGGCGGGCTGGCCTGGTT GACGCAGTTGGCGGGCCTGGACCCGCAGGCCCTCGCTGCCGCCTGTGATCAGGCCTGCGGGCAGCTGCTTAAGGTCGAGC CATGA
Upstream 100 bases:
>100_bases GTGTATTTGCTGGCCCTGCATGCCGTGGCCTGGTGGGTGTTGCCGCGCTTGCGTCAGGCGATCCCGGACCCGCCTCGGCT GCTGCGTCCCCTGCTGGCCC
Downstream 100 bases:
>100_bases GACAGCGGCTGACCCGGCGCCATTGGATGCTGTTGGCGGGCAGTGGCTTGCTGGCAGCCTGCTCCGGCACGAGCCAGAAG CTGGTGGTGCAACAGGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTLPDLWRARAQAALQSNQSQLLLVLAGTQTAAVPGISAAGATPDSRRFTAAADAELLWGGPDGPRPHALPPLPAGVSPA LISWVAQQQLRLPLVVADAGAFVAPAVPHVQLGLPPAACLSSGAAMAPAVVERLLQRGRQLGLGFRQRFPEGLLVLAECV PGGTSTAEALLRGLGVDAAGLVSGSLRQPPHSLRGALVQQGLDAMTARGISSEEPLEVVAAVGDPFQAMALGVLQGLLLP AEGPGPQALLAGGSQMLALAGLWMASLSEAERAACHQQLAVVTTSWVMQEPGSNLELLAQRLAAVWGVQPPLFSSALRFD GCQQQALLDYECGYVKEGVGAGGLAWLTQLAGLDPQALAAACDQACGQLLKVEP
Sequences:
>Translated_374_residues MTLPDLWRARAQAALQSNQSQLLLVLAGTQTAAVPGISAAGATPDSRRFTAAADAELLWGGPDGPRPHALPPLPAGVSPA LISWVAQQQLRLPLVVADAGAFVAPAVPHVQLGLPPAACLSSGAAMAPAVVERLLQRGRQLGLGFRQRFPEGLLVLAECV PGGTSTAEALLRGLGVDAAGLVSGSLRQPPHSLRGALVQQGLDAMTARGISSEEPLEVVAAVGDPFQAMALGVLQGLLLP AEGPGPQALLAGGSQMLALAGLWMASLSEAERAACHQQLAVVTTSWVMQEPGSNLELLAQRLAAVWGVQPPLFSSALRFD GCQQQALLDYECGYVKEGVGAGGLAWLTQLAGLDPQALAAACDQACGQLLKVEP >Mature_373_residues TLPDLWRARAQAALQSNQSQLLLVLAGTQTAAVPGISAAGATPDSRRFTAAADAELLWGGPDGPRPHALPPLPAGVSPAL ISWVAQQQLRLPLVVADAGAFVAPAVPHVQLGLPPAACLSSGAAMAPAVVERLLQRGRQLGLGFRQRFPEGLLVLAECVP GGTSTAEALLRGLGVDAAGLVSGSLRQPPHSLRGALVQQGLDAMTARGISSEEPLEVVAAVGDPFQAMALGVLQGLLLPA EGPGPQALLAGGSQMLALAGLWMASLSEAERAACHQQLAVVTTSWVMQEPGSNLELLAQRLAAVWGVQPPLFSSALRFDG CQQQALLDYECGYVKEGVGAGGLAWLTQLAGLDPQALAAACDQACGQLLKVEP
Specific function: Unknown
COG id: COG2038
COG function: function code H; NaMN:DMB phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0284 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003200 - InterPro: IPR002805 [H]
Pfam domain/function: PF02277 DBI_PRT [H]
EC number: NA
Molecular weight: Translated: 38343; Mature: 38211
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00024 HEMOPEXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPDLWRARAQAALQSNQSQLLLVLAGTQTAAVPGISAAGATPDSRRFTAAADAELLWG CCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCCCCCCCCCEEEECCCEEEEC GPDGPRPHALPPLPAGVSPALISWVAQQQLRLPLVVADAGAFVAPAVPHVQLGLPPAACL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHCCCCCCEEECCCHHHHH SSGAAMAPAVVERLLQRGRQLGLGFRQRFPEGLLVLAECVPGGTSTAEALLRGLGVDAAG CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHEEHHHHCCCCCHHHHHHHHHCCCCHHH LVSGSLRQPPHSLRGALVQQGLDAMTARGISSEEPLEVVAAVGDPFQAMALGVLQGLLLP HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCC AEGPGPQALLAGGSQMLALAGLWMASLSEAERAACHQQLAVVTTSWVMQEPGSNLELLAQ CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RLAAVWGVQPPLFSSALRFDGCQQQALLDYECGYVKEGVGAGGLAWLTQLAGLDPQALAA HHHHHHCCCCHHHHHHHHCCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHH ACDQACGQLLKVEP HHHHHHHHHHCCCC >Mature Secondary Structure TLPDLWRARAQAALQSNQSQLLLVLAGTQTAAVPGISAAGATPDSRRFTAAADAELLWG CCHHHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCCCCCCCCCEEEECCCEEEEC GPDGPRPHALPPLPAGVSPALISWVAQQQLRLPLVVADAGAFVAPAVPHVQLGLPPAACL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHCCCCCCEEECCCHHHHH SSGAAMAPAVVERLLQRGRQLGLGFRQRFPEGLLVLAECVPGGTSTAEALLRGLGVDAAG CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHEEHHHHCCCCCHHHHHHHHHCCCCHHH LVSGSLRQPPHSLRGALVQQGLDAMTARGISSEEPLEVVAAVGDPFQAMALGVLQGLLLP HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCC AEGPGPQALLAGGSQMLALAGLWMASLSEAERAACHQQLAVVTTSWVMQEPGSNLELLAQ CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RLAAVWGVQPPLFSSALRFDGCQQQALLDYECGYVKEGVGAGGLAWLTQLAGLDPQALAA HHHHHHCCCCHHHHHHHHCCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHH ACDQACGQLLKVEP HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12917642 [H]