Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148241761

Identifier: 148241761

GI number: 148241761

Start: 601437

End: 602060

Strand: Direct

Name: 148241761

Synonym: SynRCC307_0662

Alternate gene names: NA

Gene position: 601437-602060 (Clockwise)

Preceding gene: 148241760

Following gene: 148241762

Centisome position: 27.03

GC content: 66.83

Gene sequence:

>624_bases
ATGAGCCCGCGCCAGATGACCGAGACGGCCTACATGGCCGCCAGCACCGGTCTGCTGTGGGTGGCGATCTACTACTTGCC
CATCGGTGATGCCCTGTTTCGCCTGGCGATCCCCTTGCCGCTGGTGCTGTTGCAGTTGCGCCATGGCGGCCGCACGGCCT
TGGAGGGTGTGGCGGTCACGGTGCTGCTGCTCACCGTCTTGATGGGGCCGGTGCGCGGGCCGTTGATGCTGTTCCCCTAT
GGCCTGCTCTCGCTCTGGCTGGGCTGGTGTTGGCGCCGCCAATGCAGCTGGTGGTTTTCCATGGCCGTGGGCGTGCTGAT
TGGGGCGGCGGGTTTTTTGGTGCGGGTGGCGCTGGTGTCGCTGCTGCTCGGGGAAAACCTTTGGGTGGTGATCACAGCCG
CTGCCTCGGGCTTGCTCAATGGCCTGGCCGATCGCCTGCAGCTGCCGGTGGCGCCCACCCTCGATCAGGTGCAGGTGGCG
GCGTTGCTGCTCGTGGTGGCGCAAAACATCGTGTATTTGCTGGCCCTGCATGCCGTGGCCTGGTGGGTGTTGCCGCGCTT
GCGTCAGGCGATCCCGGACCCGCCTCGGCTGCTGCGTCCCCTGCTGGCCCTTGACCCTTCCTGA

Upstream 100 bases:

>100_bases
ATCCTTCAGCACCTGCTGAAGCGGTGACCAAAGCCTTGCGGGCCGCTGGCTTGCCCTTTGAAGTGGAGACCATCGAGCGG
CTTCAGCCCGCCAAACAGCC

Downstream 100 bases:

>100_bases
TCTCTGGCGAGCTCGGGCTCAAGCAGCGCTGCAAAGCAACCAGAGCCAGCTGTTGCTGGTGCTTGCTGGCACGCAAACCG
CAGCTGTGCCTGGGATTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSPRQMTETAYMAASTGLLWVAIYYLPIGDALFRLAIPLPLVLLQLRHGGRTALEGVAVTVLLLTVLMGPVRGPLMLFPY
GLLSLWLGWCWRRQCSWWFSMAVGVLIGAAGFLVRVALVSLLLGENLWVVITAAASGLLNGLADRLQLPVAPTLDQVQVA
ALLLVVAQNIVYLLALHAVAWWVLPRLRQAIPDPPRLLRPLLALDPS

Sequences:

>Translated_207_residues
MSPRQMTETAYMAASTGLLWVAIYYLPIGDALFRLAIPLPLVLLQLRHGGRTALEGVAVTVLLLTVLMGPVRGPLMLFPY
GLLSLWLGWCWRRQCSWWFSMAVGVLIGAAGFLVRVALVSLLLGENLWVVITAAASGLLNGLADRLQLPVAPTLDQVQVA
ALLLVVAQNIVYLLALHAVAWWVLPRLRQAIPDPPRLLRPLLALDPS
>Mature_206_residues
SPRQMTETAYMAASTGLLWVAIYYLPIGDALFRLAIPLPLVLLQLRHGGRTALEGVAVTVLLLTVLMGPVRGPLMLFPYG
LLSLWLGWCWRRQCSWWFSMAVGVLIGAAGFLVRVALVSLLLGENLWVVITAAASGLLNGLADRLQLPVAPTLDQVQVAA
LLLVVAQNIVYLLALHAVAWWVLPRLRQAIPDPPRLLRPLLALDPS

Specific function: Unknown

COG id: COG4241

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22614; Mature: 22482

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRQMTETAYMAASTGLLWVAIYYLPIGDALFRLAIPLPLVLLQLRHGGRTALEGVAVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VLLLTVLMGPVRGPLMLFPYGLLSLWLGWCWRRQCSWWFSMAVGVLIGAAGFLVRVALVS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLGENLWVVITAAASGLLNGLADRLQLPVAPTLDQVQVAALLLVVAQNIVYLLALHAVA
HHHCCCHHEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WWVLPRLRQAIPDPPRLLRPLLALDPS
HHHHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SPRQMTETAYMAASTGLLWVAIYYLPIGDALFRLAIPLPLVLLQLRHGGRTALEGVAVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VLLLTVLMGPVRGPLMLFPYGLLSLWLGWCWRRQCSWWFSMAVGVLIGAAGFLVRVALVS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLGENLWVVITAAASGLLNGLADRLQLPVAPTLDQVQVAALLLVVAQNIVYLLALHAVA
HHHCCCHHEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WWVLPRLRQAIPDPPRLLRPLLALDPS
HHHHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA