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The map label for this gene is rbcR [H]

Identifier: 148241334

GI number: 148241334

Start: 235914

End: 236897

Strand: Direct

Name: rbcR [H]

Synonym: SynRCC307_0235

Alternate gene names: 148241334

Gene position: 235914-236897 (Clockwise)

Preceding gene: 148241326

Following gene: 148241337

Centisome position: 10.6

GC content: 61.89

Gene sequence:

>984_bases
ATGGCGGACCTTCCTTTCACCCTTGATCAGCTGCGCATCCTGCGGGCGATCGCCAGCGAGGGCAGCTTTAAGAAGGCCGC
CGACAGCTTGTATGTCACCCAGCCTGCGGTGAGTCTGCAGATCCAGAACCTGGAGAAGCAGCTGGATGTCTCCCTATTCG
ATCGCGGTGGCCGCAAGGCGCAGCTGACCGAAGCCGGCCATCTGCTGCTCAGCTATTCCGAGCGGATACTCAGTCAATGC
CAGGAGGCCTGCCGGGCCCTGGATGATTTGCACAACCTCAAAGGCGGCTCGCTGATCGTGGGTGCGAGCCAGACCACGGG
CACCTATCTGATGCCGCGGATGATTGGCCTGTTCCGCCAGAAATATCCGGATGTGTCGGTGCAGTTGCAGGTGCACAGCA
CCCGCCGCACCGGTTGGAGCGTGGCCAATGGCCAGATCGATCTGGCGATCATTGGCGGTGAGCTGCCGCCGGAGTTGATG
GAGCAGCTTCAGGTGGTGCCTTACGCCAGTGAGGAGCTGGCTTTGGTGCTGCCGGTCAAACACCCGATGGCTCGGCTGCA
GGAACTGCAGAAAGACGATCTCTACCGGCTCTCTTTTATTTGCCTTGATGCCCAATCCACCACCCGCAAGGTGGTGGACC
AGTTGCTCTCGCGCGGTGGCTTGGATGTGCAGCGGCTGCGCATCGAAATGGAGCTCAATTCGTTGGAGGCCATCAAGAAC
GCCGTTCAGAGCGGCCTTGGTGCTGCCTTCCTGCCCGTGGTGTCGATTGAGCGGGAGTTGGCTAGCGGCACCTTGCACCG
GGGCGTGATGGCTGATCTGAGCGTGCGCAGGCAACTGCGCCTAATCACCCACCCCGCCCGCTATTGCTCACGGGCATCAG
CAGCCTTCCGCCGCGAAATCCTGCCGGTGTTTGCTAGCCCCGACAGCCCACTAAGGCGCGCTCAGCCCTCCGCTGAATCA
GCTCAGGCCCCTGATGCGGCCTAG

Upstream 100 bases:

>100_bases
CCGATCAGCAGGATCAGCATCACGACACTGCTGTGGTGCATCTGCATCAGGGATGAATAGCAGCCTTAGAGTTTGATGCC
GCCGGGAGCCGGGCCGCAGC

Downstream 100 bases:

>100_bases
GGGTCAGAACTGATCCGCTTCTGGGGTGATGCCCACGGTGTCATCAGCAGCGCCAGCGATGCCGGGGTTCTGGAATTTGT
TCTCACCCGCGTCGGTTTGA

Product: RuBisCO operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MADLPFTLDQLRILRAIASEGSFKKAADSLYVTQPAVSLQIQNLEKQLDVSLFDRGGRKAQLTEAGHLLLSYSERILSQC
QEACRALDDLHNLKGGSLIVGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGELPPELM
EQLQVVPYASEELALVLPVKHPMARLQELQKDDLYRLSFICLDAQSTTRKVVDQLLSRGGLDVQRLRIEMELNSLEAIKN
AVQSGLGAAFLPVVSIERELASGTLHRGVMADLSVRRQLRLITHPARYCSRASAAFRREILPVFASPDSPLRRAQPSAES
AQAPDAA

Sequences:

>Translated_327_residues
MADLPFTLDQLRILRAIASEGSFKKAADSLYVTQPAVSLQIQNLEKQLDVSLFDRGGRKAQLTEAGHLLLSYSERILSQC
QEACRALDDLHNLKGGSLIVGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGELPPELM
EQLQVVPYASEELALVLPVKHPMARLQELQKDDLYRLSFICLDAQSTTRKVVDQLLSRGGLDVQRLRIEMELNSLEAIKN
AVQSGLGAAFLPVVSIERELASGTLHRGVMADLSVRRQLRLITHPARYCSRASAAFRREILPVFASPDSPLRRAQPSAES
AQAPDAA
>Mature_326_residues
ADLPFTLDQLRILRAIASEGSFKKAADSLYVTQPAVSLQIQNLEKQLDVSLFDRGGRKAQLTEAGHLLLSYSERILSQCQ
EACRALDDLHNLKGGSLIVGASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGELPPELME
QLQVVPYASEELALVLPVKHPMARLQELQKDDLYRLSFICLDAQSTTRKVVDQLLSRGGLDVQRLRIEMELNSLEAIKNA
VQSGLGAAFLPVVSIERELASGTLHRGVMADLSVRRQLRLITHPARYCSRASAAFRREILPVFASPDSPLRRAQPSAESA
QAPDAA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=256, Percent_Identity=31.640625, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=30.5841924398625, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=27.2727272727273, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=31.2, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=27.5303643724696, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790399, Length=253, Percent_Identity=28.8537549407115, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=25.5172413793103, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87082132, Length=264, Percent_Identity=28.7878787878788, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=26.2798634812287, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081904, Length=181, Percent_Identity=33.1491712707182, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=29.4416243654822, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788626, Length=247, Percent_Identity=29.9595141700405, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082024, Length=262, Percent_Identity=27.0992366412214, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=256, Percent_Identity=28.515625, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=26.0162601626016, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787806, Length=248, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789204, Length=261, Percent_Identity=24.5210727969349, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=260, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789173, Length=310, Percent_Identity=28.3870967741935, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=271, Percent_Identity=25.830258302583, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787589, Length=261, Percent_Identity=27.9693486590038, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=267, Percent_Identity=27.7153558052434, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790011, Length=276, Percent_Identity=24.2753623188406, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI48994962, Length=127, Percent_Identity=31.496062992126, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789506, Length=174, Percent_Identity=29.8850574712644, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=27.972027972028, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36020; Mature: 35889

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLPFTLDQLRILRAIASEGSFKKAADSLYVTQPAVSLQIQNLEKQLDVSLFDRGGRKA
CCCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHHCHHHHCCCCCEE
QLTEAGHLLLSYSERILSQCQEACRALDDLHNLKGGSLIVGASQTTGTYLMPRMIGLFRQ
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGELPPELMEQLQVVPYASEELALVLPVK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECC
HPMARLQELQKDDLYRLSFICLDAQSTTRKVVDQLLSRGGLDVQRLRIEMELNSLEAIKN
CHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCHHHEEEEHHHHHHHHHHH
AVQSGLGAAFLPVVSIERELASGTLHRGVMADLSVRRQLRLITHPARYCSRASAAFRREI
HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVFASPDSPLRRAQPSAESAQAPDAA
HHEECCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADLPFTLDQLRILRAIASEGSFKKAADSLYVTQPAVSLQIQNLEKQLDVSLFDRGGRKA
CCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHHCHHHHCCCCCEE
QLTEAGHLLLSYSERILSQCQEACRALDDLHNLKGGSLIVGASQTTGTYLMPRMIGLFRQ
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVSVQLQVHSTRRTGWSVANGQIDLAIIGGELPPELMEQLQVVPYASEELALVLPVK
HCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECC
HPMARLQELQKDDLYRLSFICLDAQSTTRKVVDQLLSRGGLDVQRLRIEMELNSLEAIKN
CHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCHHHEEEEHHHHHHHHHHH
AVQSGLGAAFLPVVSIERELASGTLHRGVMADLSVRRQLRLITHPARYCSRASAAFRREI
HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVFASPDSPLRRAQPSAESAQAPDAA
HHEECCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]