| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is yaeT [H]
Identifier: 147675293
GI number: 147675293
Start: 1959454
End: 1961865
Strand: Reverse
Name: yaeT [H]
Synonym: VC0395_A1843
Alternate gene names: 147675293
Gene position: 1961865-1959454 (Counterclockwise)
Preceding gene: 147673634
Following gene: 147674756
Centisome position: 64.88
GC content: 47.76
Gene sequence:
>2412_bases ATGGCGATGAAACAGATTCTGCTCGCGACACTGCTTGCCACGAGCGTGTCGGCGAATGGTGCCGAAAAATTTGTGGTACA GGATATTCAAATTGATGGCCTGCAAAGGGTCGCTTTGGGTGCGGCGTTGTTGAAAATGCCTGTTCGAGTCGGCGACAGTG TCGATTCGCAAGATGTCGCGAACATCATCAAAGCGCTCTATTCCTCAGGTAACTTTGAGGATGTCAAAGTATTGCGTGAT GGCAATACCTTGATGGTGCAGGTTAAAGAGCGCCCGACCATTGCAAGCGTGTCGTTTTCTGGCAACAAAGCGATCAAAGA GGAGCAACTCAAGCAAAACTTGGAAGCTTCGAGCATCCGAGTTGGCGAAGCCTTGGATCGAACGACACTCAGCAATATTG AAAAAGGCTTAGAAGATTTTTACTACAGCGTGGGTAAATACAACGCGACCGTGAAAGCGGTGGTAACCCCATTGCCGCGC AACCGTGCTGACCTTAAGTTTGTCTTTACTGAGGGCGTTTCCGCTAAGATCCAACAGATCAACTTTATCGGTAACCAAGT GTTTAGCGATGAAGAGTTGCTGTCACGTTTTAACCTCAACGTTGATGTCGCATGGTGGAACTTCCTTGCGGATGATAAGT ACAAGAAGCAAGTGCTGGCGGGTGATATTGAAGCGCTGCGTACTTACTATCTGGATCGCGGTTATCTGAAGTTTCAGGTT GATAGCACACAAGTGGCCATCTCTCCCGATAAGAAGGGCGTGTACATCACGCTGAACTTGAATGAAGGTGAGCCGTACAC GGTAAGCAAAGTGCAGTTCCGTGGTGAGCTGATGGGCAAAGAGGCCGAGTTTACTTCTCTTATCCCATTTGAAATCGGCG AAACCTATAACGGTTCTGCGGTGACTAGACTCGAAGAGAGTGTTAAGAAAGTGCTTGGGGAATCTGGCTACGCCTATCCA CAAGTACGCACCATTCCTGAATTTGATGATGAAAAGCAGCAAGTGTCACTGGTGGTTCATGTCGAAGCGGGTAAACGTGT CTATGTCCGTGACATCCGTTTTGTCGGTAACAACAGCACTCGTGATGAAGTCTTGCGCCGTGAAATGCGTCAGATGGAAG GCTCCTGGCTCAACTCAAAAGACATCGAAACCGGTAAGACTCGTCTCAATCGTTTAGGTTTCTTTGAAACGGTAGAAGTG CAAACGGTGCGCGTGCCTGGTAGTGAAGACCAAGTGGATCTTGTTTACAGCGTAAAAGAGGCGAACTCAGGCAACGTCAA CTTCGGTGTCGGTTACGGTACTGAATCCGGGGTGAGCTTCCAAGTCGGTCTGCAACAAGACAACTTCTTAGGTTCGGGTA ACCGCGTTGGCGTGAATGCCATGATCAACGATTATCAGAAAAACCTGACGTTAGAATATCGCGATCCTTACTGGAACCTC GATGGTGTCAGCTTGGGCGGCAAAGTTTTCTACAACCAGTTTGAAGCTTCTGAAGCGGGCATTGTTGACTATACCAACGA AAGTTACGGAACCAGTTTGACTTGGGGTTTCCCATTTGATGAATTGAACCGATTTGAGTTTGGTATTGGTTACACCCACA ACAAGATTGGTAACTTAACGCCTTATCTGCAAGTGGAAAACTTCCTTGCTGCGCAGGCGAGTAACATCGATTCTGGCGGT AACTTGTTGACCGATGACTTCGATATCAACTTATCTTGGACGCGTAATAACCTCAATAACAGCTATTTTCCGACGGCGGG TAACCACCAGCGTGCTTTCTACAAAATGACAGTGCCGGGGTCGGACGCGCAGTACTTTAAGCTGCAATACGATGTTCGTC AGTATTTCCCGTTGACCAAGAAACATGAGTTTACCTTACTGCTGCGTGGCCGTTTAGGTTACGGTAACGGTTATGGTCAA ACGGATGGAAAAGATAACTTGTTCCCGTTTTATGAGAACTTCTATGCGGGCGGCTTTACCTCATTACGTGGTTTTGGGTC AAACTCTGCAGGTCCTAAAGCGGTGTACCGTGACTACTCGGGTTCGAACAATGGCTCCGATACTGCCACCGATGATTCGG TAGGGGGTAACGCGATTGCTCTTGCCAGCGTAGAGCTGATTGTACCAACGCCGTTTGCTTCAGAAGAAGCACGCAACCAA ATTCGTACCAGTATCTTCTACGATATGGCGAGCGTGTGGGATACCGAGTTCGATTATCGTGGTAAAGCGGATTATGGTAA CCAGTACTATTACGATTATTCAGATCCAACCAATTACCGCTCATCTTACGGTGTGGCGTTGCAGTGGGTGTCACCAATGG GACCTTTAGTGTTCTCATTGGCTAAACCGATTAAAAAGTATGAGGGTGATGACGAAGAATTCTTCACCTTCACCATTGGA AGAACCTTCTAG
Upstream 100 bases:
>100_bases CATTTTCTCTTTAATGGCCGTTGCAATCTTTAACGATTTTACTCACCTGTGATTGATAAACATTAGGCAAGAGTTGCAGT AAGGAAGAACTCAAAACAAT
Downstream 100 bases:
>100_bases GAGAGGAACATATTTTGAAAAACATGATCAAAGCAGCCAGCCTTGGCCTGATTATTCTTAGCTCATCAATGATGGCGAAT GCGGCTGAAGCAGCGCAGAA
Product: outer membrane protein assembly factor YaeT
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 803; Mature: 802
Protein sequence:
>803_residues MAMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGNFEDVKVLRD GNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPR NRADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQV DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAYP QVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEV QTVRVPGSEDQVDLVYSVKEANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAAQASNIDSGG NLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQ TDGKDNLFPFYENFYAGGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQ IRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIG RTF
Sequences:
>Translated_803_residues MAMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGNFEDVKVLRD GNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPR NRADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQV DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAYP QVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEV QTVRVPGSEDQVDLVYSVKEANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAAQASNIDSGG NLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQ TDGKDNLFPFYENFYAGGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQ IRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIG RTF >Mature_802_residues AMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGNFEDVKVLRDG NTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRN RADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQVD STQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAYPQ VRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQ TVRVPGSEDQVDLVYSVKEANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLD GVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAAQASNIDSGGN LLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQT DGKDNLFPFYENFYAGGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQI RTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGR TF
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=822, Percent_Identity=56.3260340632603, Blast_Score=954, Evalue=0.0,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 89931; Mature: 89800
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVA CCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHH NIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR HHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCHHHEE VGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHH NFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQV HHHHHHCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSA CCEEEEECCCCCCEEEEEEECCCCCEEEEEEEEEHHHCCCCCCCEEECCEECCCCCCCHH VTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNST HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEECCCCC RDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKE HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEEC ANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL CCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHCCEEEECCCCCCC DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLT CCEECCCEEEEEECCCCCCCEEEECCCCCCCEEEECCCHHHCCCEEEECCCCCCCCCCCC PYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPG CCEEHHHHHHHHHCCCCCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCC SDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFT CCCEEEEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCH SLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQ HHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHH IRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSL HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHH AKPIKKYEGDDEEFFTFTIGRTF HHHHHHHCCCCCEEEEEEECCCC >Mature Secondary Structure AMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVA CHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHH NIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR HHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCHHHEE VGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHH NFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQV HHHHHHCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSA CCEEEEECCCCCCEEEEEEECCCCCEEEEEEEEEHHHCCCCCCCEEECCEECCCCCCCHH VTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNST HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEECCCCC RDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKE HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEEC ANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL CCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHCCEEEECCCCCCC DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLT CCEECCCEEEEEECCCCCCCEEEECCCCCCCEEEECCCHHHCCCEEEECCCCCCCCCCCC PYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPG CCEEHHHHHHHHHCCCCCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCC SDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFT CCCEEEEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCH SLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQ HHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHH IRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSL HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHH AKPIKKYEGDDEEFFTFTIGRTF HHHHHHHCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA