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The map label for this gene is ompH

Identifier: 147674756

GI number: 147674756

Start: 1958930

End: 1959439

Strand: Reverse

Name: ompH

Synonym: VC0395_A1842

Alternate gene names: 147674756

Gene position: 1959439-1958930 (Counterclockwise)

Preceding gene: 147675293

Following gene: 147675586

Centisome position: 64.79

GC content: 44.71

Gene sequence:

>510_bases
TTGAAAAACATGATCAAAGCAGCCAGCCTTGGCCTGATTATTCTTAGCTCATCAATGATGGCGAATGCGGCTGAAGCAGC
GCAGAAAATTGGCTACATCAACACTGCGCAAGTGTTCCAAGCGCTGCCGCAACGTGAAGTCGTTTTGCAAAAGATGCAAG
AAGAGTTCAAAGACAAAGCGGCTGAGCTGCAAGCTATCCAAGCGGATGCTAAAACCAAGATTGAGAAGCTCAAGCGTGAT
GGTCAATTGATGGGACAAGATGAAGTAGAGAAACTGCGCATCGAAATCGGTCAATTGGACAGCAAATACAAGATCAAAGC
ACAAGCGTTAGAGCAAGCGTCTGCTCGTCGTGAAGCCGAAGAGAAGCAAAAACTGTTTAAAGTGATCCAAGATGCAGTGA
AGAAAGTGGCTGAGAAAGAAGGCTACGATATCGTGCTAGACACGAGCTCAATGCAATACGGTAAGCCAGAACACAATCTG
TCTGAGAAAGTTATTAAAGCCATTAAATAA

Upstream 100 bases:

>100_bases
TAGTGTTCTCATTGGCTAAACCGATTAAAAAGTATGAGGGTGATGACGAAGAATTCTTCACCTTCACCATTGGAAGAACC
TTCTAGGAGAGGAACATATT

Downstream 100 bases:

>100_bases
TCGAAAATTATGACCACACTCACTTTAGCCGAATTGGCTACTATCACCGGGGGGGAGTTGTTCGGTGATCCAACAGCACT
GGTCAGTGCCGTTGCGCCTA

Product: outer membrane protein OmpH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKNMIKAASLGLIILSSSMMANAAEAAQKIGYINTAQVFQALPQREVVLQKMQEEFKDKAAELQAIQADAKTKIEKLKRD
GQLMGQDEVEKLRIEIGQLDSKYKIKAQALEQASARREAEEKQKLFKVIQDAVKKVAEKEGYDIVLDTSSMQYGKPEHNL
SEKVIKAIK

Sequences:

>Translated_169_residues
MKNMIKAASLGLIILSSSMMANAAEAAQKIGYINTAQVFQALPQREVVLQKMQEEFKDKAAELQAIQADAKTKIEKLKRD
GQLMGQDEVEKLRIEIGQLDSKYKIKAQALEQASARREAEEKQKLFKVIQDAVKKVAEKEGYDIVLDTSSMQYGKPEHNL
SEKVIKAIK
>Mature_169_residues
MKNMIKAASLGLIILSSSMMANAAEAAQKIGYINTAQVFQALPQREVVLQKMQEEFKDKAAELQAIQADAKTKIEKLKRD
GQLMGQDEVEKLRIEIGQLDSKYKIKAQALEQASARREAEEKQKLFKVIQDAVKKVAEKEGYDIVLDTSSMQYGKPEHNL
SEKVIKAIK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family

Homologues:

Organism=Escherichia coli, GI1786375, Length=148, Percent_Identity=35.1351351351351, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): SKP_VIBCH (Q9KPW1)

Other databases:

- EMBL:   AE003852
- PIR:   A82099
- RefSeq:   NP_231882.1
- ProteinModelPortal:   Q9KPW1
- SMR:   Q9KPW1
- GeneID:   2613173
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC2251
- TIGR:   VC_2251
- HOGENOM:   HBG495360
- OMA:   AVYVNPR
- ProtClustDB:   CLSK874733
- InterPro:   IPR005632
- SMART:   SM00935

Pfam domain/function: PF03938 OmpH; SSF111384 OM_chaperone_Skp/OmpH

EC number: NA

Molecular weight: Translated: 18952; Mature: 18952

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNMIKAASLGLIILSSSMMANAAEAAQKIGYINTAQVFQALPQREVVLQKMQEEFKDKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
AELQAIQADAKTKIEKLKRDGQLMGQDEVEKLRIEIGQLDSKYKIKAQALEQASARREAE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EKQKLFKVIQDAVKKVAEKEGYDIVLDTSSMQYGKPEHNLSEKVIKAIK
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKNMIKAASLGLIILSSSMMANAAEAAQKIGYINTAQVFQALPQREVVLQKMQEEFKDKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
AELQAIQADAKTKIEKLKRDGQLMGQDEVEKLRIEIGQLDSKYKIKAQALEQASARREAE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EKQKLFKVIQDAVKKVAEKEGYDIVLDTSSMQYGKPEHNLSEKVIKAIK
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301