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The map label for this gene is ycfH [C]

Identifier: 147674791

GI number: 147674791

Start: 1721613

End: 1722380

Strand: Reverse

Name: ycfH [C]

Synonym: VC0395_A1600

Alternate gene names: 147674791

Gene position: 1722380-1721613 (Counterclockwise)

Preceding gene: 147674380

Following gene: 147675620

Centisome position: 56.96

GC content: 45.57

Gene sequence:

>768_bases
ATGTTTGTAGATTCTCATTGTCATCTCGACAAGTTGGATTACCAAGACTTACACGCGGATGTCAGCGATGTGCTCGACAA
AGCGCACCAAGCCAAAGTGGAATATTTACTCTCGGTTGGCGTTACGCTTGATTCTTTCCCTAAGATGCTCGCGATGATCG
AGCCTTTCTCGCAAGTGTATGCTTCTTGTGGTGTGCATCCACTGGATGTGCAGAGTGATTTCTCGCTCGACCTTTTCCAC
CAATATGCACAGCATCCTCGAGTGGTTGCGATTGGCGAAACGGGGTTGGATTATCATTACCAACCTGAAACCGCCGATTT
ACAAAAACTGCGTTTTCGGCAGCAGATTGAGACTGCAGTGGCTCTGAATAAACCGCTGATCATTCATACTCGTAATGCTC
AACAAGATACTCTTCAATTACTGAGAGAAGGAAAAGCGCAGCAGTGTGGTGGTGTGATTCACTGTTTCACAGAGGATCTT
GCTTTTGCTCAAGCTGCGATGGAGCTGGGATTCTACATCTCTATTTCAGGGATTGTGACTTTCCGACAAGCAACCGATCT
TAAAGAGGTCGTGAAAGCCTTACCTCTGGATCGTCTTTTGATTGAAACGGATTCACCTTATCTCGCCCCAGTACCGCATC
GTGGTAAAGAGAACCAACCTGCTTATGTGGTCGAAGTCGCTGCCTATATTGCCGCTCTAAAAGGCGTTTCTTTGACAGAA
GTTGCGCAAAAAACAACACAAAATTTTCAAAATCTTTTTTTGCGATGA

Upstream 100 bases:

>100_bases
CGAGCTTGGAAAGGCTGATGGAACAATTGAACCAGTTCAGTGGATTGAATACAGAACTGCTGTTGCTGCAATGGTTATAT
CAATTTAGTGATGAGGAAAC

Downstream 100 bases:

>100_bases
AAATCATATTTAGATAAAAAAGCGAGCGTTTGCTCGCTTTTTTATTCGTCAAATAAATAAGAAATTCTAAATAAGCAGGT
GTTTACTGTATTTGTTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MFVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVYASCGVHPLDVQSDFSLDLFH
QYAQHPRVVAIGETGLDYHYQPETADLQKLRFRQQIETAVALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDL
AFAQAAMELGFYISISGIVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAALKGVSLTE
VAQKTTQNFQNLFLR

Sequences:

>Translated_255_residues
MFVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVYASCGVHPLDVQSDFSLDLFH
QYAQHPRVVAIGETGLDYHYQPETADLQKLRFRQQIETAVALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDL
AFAQAAMELGFYISISGIVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAALKGVSLTE
VAQKTTQNFQNLFLR
>Mature_255_residues
MFVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVYASCGVHPLDVQSDFSLDLFH
QYAQHPRVVAIGETGLDYHYQPETADLQKLRFRQQIETAVALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDL
AFAQAAMELGFYISISGIVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAALKGVSLTE
VAQKTTQNFQNLFLR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=33.8289962825279, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=33.8289962825279, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=34.3065693430657, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=31.3953488372093, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI225903424, Length=222, Percent_Identity=28.3783783783784, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061595, Length=231, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI14042943, Length=266, Percent_Identity=24.4360902255639, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI225903439, Length=247, Percent_Identity=24.2914979757085, Blast_Score=79, Evalue=4e-15,
Organism=Escherichia coli, GI1787342, Length=253, Percent_Identity=54.5454545454545, Blast_Score=281, Evalue=3e-77,
Organism=Escherichia coli, GI48994985, Length=241, Percent_Identity=33.195020746888, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=30.078125, Blast_Score=123, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17559024, Length=281, Percent_Identity=29.8932384341637, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=26.7924528301887, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17565396, Length=306, Percent_Identity=26.4705882352941, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17543026, Length=303, Percent_Identity=25.0825082508251, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648690, Length=268, Percent_Identity=31.3432835820896, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24586117, Length=208, Percent_Identity=30.7692307692308, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI221330018, Length=208, Percent_Identity=30.7692307692308, Blast_Score=92, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28583; Mature: 28583

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVY
CCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASCGVHPLDVQSDFSLDLFHQYAQHPRVVAIGETGLDYHYQPETADLQKLRFRQQIETAV
HHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDLAFAQAAMELGFYISISGIVT
HCCCCEEEEECCCCHHHHHHHHCCCHHHHCCEEEHHHHHHHHHHHHHHHCEEEEEEHEEE
FRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAALKGVSLTE
EHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
VAQKTTQNFQNLFLR
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MFVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVY
CCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASCGVHPLDVQSDFSLDLFHQYAQHPRVVAIGETGLDYHYQPETADLQKLRFRQQIETAV
HHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDLAFAQAAMELGFYISISGIVT
HCCCCEEEEECCCCHHHHHHHHCCCHHHHCCEEEHHHHHHHHHHHHHHHCEEEEEEHEEE
FRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAALKGVSLTE
EHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
VAQKTTQNFQNLFLR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]