Click here to switch to the map view.

The map label for this gene is yqfB [C]

Identifier: 147674593

GI number: 147674593

Start: 1240625

End: 1240969

Strand: Reverse

Name: yqfB [C]

Synonym: VC0395_A1180

Alternate gene names: 147674593

Gene position: 1240969-1240625 (Counterclockwise)

Preceding gene: 147674196

Following gene: 147675386

Centisome position: 41.04

GC content: 45.22

Gene sequence:

>345_bases
ATGTCCGTCCCAACTCAAATTACCTTTTTTGAATTTTTGACCCCCTTGGTGGCCTCTGGCCAGAAGACCATCACCATCCG
TGATAAATCGGAGAGCCATTACGTGCCCGGCACTCGCGTTGAAGTGTTCACTTTAGAAACCCAGCGTAAAGTGTGTGAGA
TAGATATTCTGGCGGTTGAACCGCTCAAGTTTGATGAGATCAACGAGTTTCACGCTGAGCAAGAAGCGATAGAATTACCC
AAACTCAAGGCGTTGATCCAAGAGATTTACCCCAATATCGATGAGCTGTATGTCATTACTTATCAACTAGCGAAGTCATC
GAGCGCAAGAATCATGGTGAAATAA

Upstream 100 bases:

>100_bases
TCGCTGATTCATCACACAAACAGCCTCGATAATCCCTTGACCTCATTAGGGGAATGCTTCATAAAGCCCCCCTGATACGC
GATTTATCGAGGCTCTTAAT

Downstream 100 bases:

>100_bases
GCATGTCGAATACACACCAAGGCTTAAAAGCGGTCGCGATTTTAGAGTCGACCAAAGGGATTGTGTCGCTATTGTTGGGG
TTAGGGCTGCACTATGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSVPTQITFFEFLTPLVASGQKTITIRDKSESHYVPGTRVEVFTLETQRKVCEIDILAVEPLKFDEINEFHAEQEAIELP
KLKALIQEIYPNIDELYVITYQLAKSSSARIMVK

Sequences:

>Translated_114_residues
MSVPTQITFFEFLTPLVASGQKTITIRDKSESHYVPGTRVEVFTLETQRKVCEIDILAVEPLKFDEINEFHAEQEAIELP
KLKALIQEIYPNIDELYVITYQLAKSSSARIMVK
>Mature_113_residues
SVPTQITFFEFLTPLVASGQKTITIRDKSESHYVPGTRVEVFTLETQRKVCEIDILAVEPLKFDEINEFHAEQEAIELPK
LKALIQEIYPNIDELYVITYQLAKSSSARIMVK

Specific function: Unknown

COG id: COG3097

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0267 family

Homologues:

Organism=Escherichia coli, GI1789267, Length=99, Percent_Identity=40.4040404040404, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2380_VIBC3 (A5F7V7)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F7V7
- SMR:   A5F7V7
- STRING:   A5F7V7
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A1180
- eggNOG:   COG3097
- HOGENOM:   HBG296598
- OMA:   RDEAESH
- ProtClustDB:   PRK04980
- BioCyc:   VCHO345073:VC0395_A1180-MONOMER
- HAMAP:   MF_00684
- InterPro:   IPR007374
- InterPro:   IPR015947
- InterPro:   IPR008314
- PIRSF:   PIRSF029143

Pfam domain/function: PF04266 ASCH; SSF88697 PUA-like

EC number: NA

Molecular weight: Translated: 13075; Mature: 12944

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPTQITFFEFLTPLVASGQKTITIRDKSESHYVPGTRVEVFTLETQRKVCEIDILAVE
CCCCCEEHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEC
PLKFDEINEFHAEQEAIELPKLKALIQEIYPNIDELYVITYQLAKSSSARIMVK
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEC
>Mature Secondary Structure 
SVPTQITFFEFLTPLVASGQKTITIRDKSESHYVPGTRVEVFTLETQRKVCEIDILAVE
CCCCEEHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEC
PLKFDEINEFHAEQEAIELPKLKALIQEIYPNIDELYVITYQLAKSSSARIMVK
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA